MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:34.0 nTPM
GTEx:17.2 nTPM
FANTOM5:106.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
1830 Male, age 51, unknown 35.1
1870 Female, age 42, unknown 33.4
1833 Male, age 53, unknown 33.2
2666 Male, age 74, left hemisphere 29.4
2828 Female, age 72, unknown 28.1
2411 Female, age 72, unknown 27.2
2019 Male, age 18, unknown 22.7
2586 Male, age 75, left hemisphere 22.4
1827 Male, age 72, unknown 21.7
2219 Male, age 76, both hemispheres 18.4
Dorsal raphe nucleus
nTPM: 33.2
2016 Female, age 72, unknown 41.0
2750 Male, age 76, both hemispheres 38.0
1828 Male, age 53, unknown 31.9
2298 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 26.9
Inferior colliculus
nTPM: 22.5
2849 Male, age 72, unknown 24.0
1848 Female, age 42, unknown 22.4
1890 Male, age 53, unknown 21.8
2097 Female, age 72, unknown 21.8
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 24.4
2502 Female, age 75, unknown 25.2
1947 Male, age 18, unknown 24.4
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 30.1
2850 Male, age 76, both hemispheres 37.0
1831 Male, age 72, unknown 35.6
2464 Female, age 72, unknown 25.7
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 33.8
2140 Male, age 76, both hemispheres 34.5
2053 Male, age 18, unknown 33.4
2272 Male, age 74, both hemispheres 33.4
Pretectal area
nTPM: 26.1
2407 Male, age 75, both hemispheres 34.7
2316 Male, age 76, right hemisphere 34.5
2273 Male, age 74, both hemispheres 32.7
1815 Male, age 53, unknown 30.0
2224 Female, age 72, unknown 28.6
2825 Male, age 18, unknown 28.3
2667 Female, age 75, unknown 25.5
1944 Female, age 72, unknown 21.1
1817 Female, age 42, unknown 20.3
2007 Male, age 72, unknown 18.6
1816 Male, age 51, unknown 12.4
Red nucleus
nTPM: 31.9
1865 Male, age 51, unknown 42.6
1904 Male, age 53, unknown 34.4
1954 Female, age 42, unknown 34.1
2227 Male, age 72, unknown 33.2
2823 Male, age 76, right hemisphere 32.9
1821 Female, age 72, unknown 32.5
2769 Male, age 72, unknown 32.1
2584 Male, age 75, left hemisphere 32.0
2503 Female, age 72, unknown 30.0
2725 Female, age 75, unknown 29.3
2785 Male, age 18, unknown 28.7
2588 Male, age 74, left hemisphere 21.0
Substantia nigra
nTPM: 33.6
2699 Male, age 18, unknown 60.6
2665 Male, age 74, both hemispheres 38.6
1851 Male, age 51, unknown 35.4
2241 Male, age 72, unknown 33.3
2583 Male, age 75, right hemisphere 33.1
2590 Female, age 75, unknown 32.9
1916 Female, age 42, unknown 29.9
1941 Male, age 53, unknown 25.8
2409 Female, age 72, unknown 23.9
1889 Female, age 72, unknown 22.8
Superior colliculus
nTPM: 27.3
1995 Male, age 72, unknown 37.1
1913 Female, age 42, unknown 35.9
2587 Male, age 74, left hemisphere 34.3
1839 Male, age 51, unknown 29.5
2668 Female, age 75, unknown 26.8
1796 Male, age 53, unknown 24.6
1895 Male, age 76, right hemisphere 24.0
2664 Male, age 75, both hemispheres 23.4
2087 Female, age 72, unknown 20.8
2261 Male, age 18, unknown 16.0
Ventral tegmental area
nTPM: 34.0
2021 Male, age 53, unknown 39.4
2218 Male, age 76, both hemispheres 38.3
1915 Female, age 42, unknown 36.3
1942 Male, age 51, unknown 31.7
2223 Female, age 72, unknown 30.1
2410 Female, age 72, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 183

Max nTPM: 106.9
Min nTPM: 3.0
Std nTPM: 12.3
Median nTPM: 13.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 106.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 65.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 62.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 56.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 54.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 45.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 43.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 41.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 39.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 38.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 37.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.6
FF:10158-103A5 76 years, female 106.6

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