MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA Brain:45.3 nTPM
GTEx:18.0 nTPM
FANTOM5:92.1 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:17.1 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
1830 Male, age 51, unknown 45.5
1833 Male, age 53, unknown 44.9
1870 Female, age 42, unknown 43.7
1827 Male, age 72, unknown 43.0
2828 Female, age 72, unknown 42.5
2411 Female, age 72, unknown 41.9
2019 Male, age 18, unknown 39.3
2586 Male, age 75, left hemisphere 36.7
2666 Male, age 74, left hemisphere 32.6
2219 Male, age 76, both hemispheres 31.8
Dorsal raphe nucleus
nTPM: 37.9
2750 Male, age 76, both hemispheres 42.4
2016 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 37.6
2047 Male, age 72, unknown 35.4
2298 Female, age 72, unknown 31.9
Inferior colliculus
nTPM: 43.3
2097 Female, age 72, unknown 45.1
1890 Male, age 53, unknown 44.4
1848 Female, age 42, unknown 43.5
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 37.7
1947 Male, age 18, unknown 40.6
1795 Male, age 51, unknown 37.6
2502 Female, age 75, unknown 34.8
Periaquaductal grey, dorsal
nTPM: 42.8
1831 Male, age 72, unknown 45.8
2850 Male, age 76, both hemispheres 44.3
2464 Female, age 72, unknown 41.4
1840 Male, age 53, unknown 39.9
Periaquaductal grey, lateral
nTPM: 44.6
2140 Male, age 76, both hemispheres 50.8
2272 Male, age 74, both hemispheres 41.8
2053 Male, age 18, unknown 41.2
Pretectal area
nTPM: 40.7
2667 Female, age 75, unknown 50.4
2316 Male, age 76, right hemisphere 47.9
2825 Male, age 18, unknown 42.9
2407 Male, age 75, both hemispheres 42.4
2273 Male, age 74, both hemispheres 41.2
2007 Male, age 72, unknown 41.1
2224 Female, age 72, unknown 38.5
1815 Male, age 53, unknown 37.3
1816 Male, age 51, unknown 36.7
1817 Female, age 42, unknown 35.3
1944 Female, age 72, unknown 33.7
Red nucleus
nTPM: 45.3
1954 Female, age 42, unknown 49.6
2823 Male, age 76, right hemisphere 49.5
2227 Male, age 72, unknown 48.8
1904 Male, age 53, unknown 47.4
2503 Female, age 72, unknown 46.1
1865 Male, age 51, unknown 45.4
2785 Male, age 18, unknown 45.3
2769 Male, age 72, unknown 45.0
2588 Male, age 74, left hemisphere 44.8
2584 Male, age 75, left hemisphere 43.1
1821 Female, age 72, unknown 41.0
2725 Female, age 75, unknown 37.8
Substantia nigra
nTPM: 36.4
2590 Female, age 75, unknown 44.1
2583 Male, age 75, right hemisphere 41.8
2409 Female, age 72, unknown 41.6
1889 Female, age 72, unknown 38.3
1941 Male, age 53, unknown 34.6
1916 Female, age 42, unknown 34.0
2665 Male, age 74, both hemispheres 33.7
1851 Male, age 51, unknown 33.0
2699 Male, age 18, unknown 32.8
2241 Male, age 72, unknown 30.3
Superior colliculus
nTPM: 41.6
1895 Male, age 76, right hemisphere 47.0
1913 Female, age 42, unknown 46.5
1995 Male, age 72, unknown 44.6
2261 Male, age 18, unknown 43.4
1796 Male, age 53, unknown 42.0
2087 Female, age 72, unknown 42.0
2587 Male, age 74, left hemisphere 40.4
1839 Male, age 51, unknown 39.2
2664 Male, age 75, both hemispheres 35.9
2668 Female, age 75, unknown 35.1
Ventral tegmental area
nTPM: 39.6
1942 Male, age 51, unknown 43.9
2223 Female, age 72, unknown 43.8
2218 Male, age 76, both hemispheres 40.7
2021 Male, age 53, unknown 39.2
2410 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.0
Samples: 183

Max nTPM: 31.2
Min nTPM: 7.5
Std nTPM: 4.9
Median nTPM: 17.4
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 31.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 30.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 29.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 28.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 27.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.1
FF:10158-103A5 76 years, female 92.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 30.3
Sample C Male 23.2
Sample D Male 31.4
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 33.0
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 33.0
Sample C Male 28.1
Sample D Male 31.3
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 33.5
Min nTPM: 23.7
Sample B Female 33.2
Sample C Male 23.7
Sample D Male 33.5
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 30.4
Min nTPM: 17.0
Sample A Female 17.0
Sample B Female 30.4
Sample C Male 27.1
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.8
Sample A Male 17.2
Sample B Male 18.0
Sample C Female 18.3
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
74265183 Antisense, RP_051219_03_B10, Mouse strain C57BL/6J (56 days, male) 7.8
68148693 Antisense, RP_041116_01_H07, Mouse strain C57BL/6J (56 days, male) 1.7
71161363 Antisense, RP_050810_01_A10, Mouse strain C57BL/6J (56 days, male) 0.0

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