MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:26.4 nTPM
GTEx:11.4 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:1.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
2828 Female, age 72, unknown 10.9
1870 Female, age 42, unknown 8.8
2586 Male, age 75, left hemisphere 7.6
1827 Male, age 72, unknown 7.1
1830 Male, age 51, unknown 6.8
1833 Male, age 53, unknown 6.7
2019 Male, age 18, unknown 6.1
2666 Male, age 74, left hemisphere 5.6
2411 Female, age 72, unknown 5.1
2219 Male, age 76, both hemispheres 4.4
Dorsal raphe nucleus
nTPM: 17.1
2016 Female, age 72, unknown 27.5
2298 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 17.2
2047 Male, age 72, unknown 9.8
2750 Male, age 76, both hemispheres 5.9
Inferior colliculus
nTPM: 8.3
2849 Male, age 72, unknown 9.5
2097 Female, age 72, unknown 8.0
1890 Male, age 53, unknown 7.8
1848 Female, age 42, unknown 7.7
Median raphe nucleus
nTPM: 8.6
2220 Male, age 76, midline 8.6
Periaquaductal grey, anterior
nTPM: 12.6
1795 Male, age 51, unknown 18.6
2502 Female, age 75, unknown 11.1
1947 Male, age 18, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 21.1
2850 Male, age 76, both hemispheres 34.7
1840 Male, age 53, unknown 23.3
1831 Male, age 72, unknown 15.8
2464 Female, age 72, unknown 10.8
Periaquaductal grey, lateral
nTPM: 26.4
2272 Male, age 74, both hemispheres 36.1
2140 Male, age 76, both hemispheres 29.2
2053 Male, age 18, unknown 14.0
Pretectal area
nTPM: 11.2
2273 Male, age 74, both hemispheres 29.6
2224 Female, age 72, unknown 18.1
2667 Female, age 75, unknown 11.7
2825 Male, age 18, unknown 11.6
2407 Male, age 75, both hemispheres 10.1
2316 Male, age 76, right hemisphere 9.0
1815 Male, age 53, unknown 7.5
1944 Female, age 72, unknown 6.8
1816 Male, age 51, unknown 6.7
1817 Female, age 42, unknown 6.5
2007 Male, age 72, unknown 5.5
Red nucleus
nTPM: 7.6
2725 Female, age 75, unknown 9.5
2227 Male, age 72, unknown 8.8
2785 Male, age 18, unknown 8.7
2769 Male, age 72, unknown 8.0
1865 Male, age 51, unknown 7.7
2503 Female, age 72, unknown 7.7
1904 Male, age 53, unknown 7.5
1954 Female, age 42, unknown 7.4
2823 Male, age 76, right hemisphere 7.0
1821 Female, age 72, unknown 6.5
2588 Male, age 74, left hemisphere 6.3
2584 Male, age 75, left hemisphere 6.1
Substantia nigra
nTPM: 8.5
2699 Male, age 18, unknown 16.4
1916 Female, age 42, unknown 9.1
1851 Male, age 51, unknown 8.8
2241 Male, age 72, unknown 8.5
2590 Female, age 75, unknown 7.6
2583 Male, age 75, right hemisphere 7.5
1889 Female, age 72, unknown 7.1
1941 Male, age 53, unknown 6.8
2665 Male, age 74, both hemispheres 6.8
2409 Female, age 72, unknown 6.4
Superior colliculus
nTPM: 10.2
1995 Male, age 72, unknown 20.6
2587 Male, age 74, left hemisphere 13.1
1913 Female, age 42, unknown 11.0
2261 Male, age 18, unknown 10.5
2664 Male, age 75, both hemispheres 10.5
1796 Male, age 53, unknown 9.1
1839 Male, age 51, unknown 7.6
2668 Female, age 75, unknown 7.4
2087 Female, age 72, unknown 7.2
1895 Male, age 76, right hemisphere 5.2
Ventral tegmental area
nTPM: 9.7
2021 Male, age 53, unknown 12.0
1915 Female, age 42, unknown 11.1
2218 Male, age 76, both hemispheres 10.1
1942 Male, age 51, unknown 10.0
2410 Female, age 72, unknown 8.0
2223 Female, age 72, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 183

Max nTPM: 57.1
Min nTPM: 1.9
Std nTPM: 5.4
Median nTPM: 10.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 57.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 37.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 26.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 18.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 18.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 18.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.8
Sample A Female 1.3
Sample B Female 0.8
Sample C Male 1.0
Sample D Male 1.1
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.8
Sample A Female 3.4
Sample B Female 1.5
Sample C Male 0.8
Sample D Male 0.9
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 14.6
Min nTPM: 7.0
Sample B Female 7.0
Sample C Male 14.6
Sample D Male 12.7
Superior colliculi
nTPM: 1.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.6
Sample A Female 1.5
Sample B Female 2.9
Sample C Male 0.6
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.2
Sample A Male 2.3
Sample B Male 1.6
Sample C Female 1.2
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71021169 Antisense, RP_050526_04_D01, Mouse strain C57BL/6J (56 days, male) 0.0

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