MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.4 nTPM
HPA Brain:19.2 nTPM
GTEx:27.4 nTPM
FANTOM5:19.5 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:34.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.6
2586 Male, age 75, left hemisphere 22.1
2828 Female, age 72, unknown 18.3
1870 Female, age 42, unknown 18.2
1827 Male, age 72, unknown 17.3
2666 Male, age 74, left hemisphere 17.2
2019 Male, age 18, unknown 17.1
1830 Male, age 51, unknown 16.5
2411 Female, age 72, unknown 16.5
2219 Male, age 76, both hemispheres 16.4
1833 Male, age 53, unknown 16.1
Dorsal raphe nucleus
nTPM: 16.6
2298 Female, age 72, unknown 19.4
1828 Male, age 53, unknown 16.6
2016 Female, age 72, unknown 16.3
2047 Male, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 14.6
Inferior colliculus
nTPM: 16.9
1848 Female, age 42, unknown 18.3
1890 Male, age 53, unknown 16.9
2097 Female, age 72, unknown 16.3
2849 Male, age 72, unknown 16.2
Median raphe nucleus
nTPM: 13.3
2220 Male, age 76, midline 13.3
Periaquaductal grey, anterior
nTPM: 19.1
1947 Male, age 18, unknown 20.5
1795 Male, age 51, unknown 19.9
2502 Female, age 75, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 17.1
1831 Male, age 72, unknown 17.8
1840 Male, age 53, unknown 17.6
2464 Female, age 72, unknown 17.1
2850 Male, age 76, both hemispheres 15.7
Periaquaductal grey, lateral
nTPM: 19.2
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 19.6
2272 Male, age 74, both hemispheres 18.4
Pretectal area
nTPM: 17.3
2273 Male, age 74, both hemispheres 20.1
2825 Male, age 18, unknown 18.7
1816 Male, age 51, unknown 18.2
2007 Male, age 72, unknown 17.7
2667 Female, age 75, unknown 17.6
1817 Female, age 42, unknown 17.1
1944 Female, age 72, unknown 16.7
1815 Male, age 53, unknown 16.5
2316 Male, age 76, right hemisphere 16.0
2224 Female, age 72, unknown 15.9
2407 Male, age 75, both hemispheres 15.7
Red nucleus
nTPM: 18.2
2584 Male, age 75, left hemisphere 19.4
1821 Female, age 72, unknown 18.9
2725 Female, age 75, unknown 18.8
1954 Female, age 42, unknown 18.5
2588 Male, age 74, left hemisphere 18.5
1865 Male, age 51, unknown 18.4
2769 Male, age 72, unknown 18.3
1904 Male, age 53, unknown 18.2
2227 Male, age 72, unknown 18.2
2823 Male, age 76, right hemisphere 17.7
2503 Female, age 72, unknown 17.0
2785 Male, age 18, unknown 16.2
Substantia nigra
nTPM: 17.3
2665 Male, age 74, both hemispheres 19.4
2583 Male, age 75, right hemisphere 19.1
2699 Male, age 18, unknown 18.5
1941 Male, age 53, unknown 18.0
1851 Male, age 51, unknown 16.9
2241 Male, age 72, unknown 16.8
2590 Female, age 75, unknown 16.7
1889 Female, age 72, unknown 16.4
1916 Female, age 42, unknown 16.3
2409 Female, age 72, unknown 15.1
Superior colliculus
nTPM: 16.9
2664 Male, age 75, both hemispheres 19.3
2668 Female, age 75, unknown 18.5
1796 Male, age 53, unknown 18.4
2587 Male, age 74, left hemisphere 18.2
1995 Male, age 72, unknown 17.5
1913 Female, age 42, unknown 16.1
2087 Female, age 72, unknown 15.7
1895 Male, age 76, right hemisphere 15.3
2261 Male, age 18, unknown 15.2
1839 Male, age 51, unknown 14.9
Ventral tegmental area
nTPM: 16.0
1942 Male, age 51, unknown 17.5
1915 Female, age 42, unknown 17.1
2223 Female, age 72, unknown 15.8
2218 Male, age 76, both hemispheres 15.4
2021 Male, age 53, unknown 15.3
2410 Female, age 72, unknown 14.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.4
Samples: 183

Max nTPM: 55.3
Min nTPM: 15.8
Std nTPM: 6.7
Median nTPM: 26.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 55.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 53.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 49.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 42.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 41.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 41.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 40.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.5
FF:10158-103A5 76 years, female 19.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 33.2
Min nTPM: 28.0
Sample A Female 33.2
Sample B Female 31.2
Sample C Male 30.9
Sample D Male 28.0
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.0
Sample A Female 30.4
Sample B Female 32.3
Sample C Male 28.0
Sample D Male 30.4
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 35.9
Min nTPM: 31.0
Sample B Female 35.9
Sample C Male 31.6
Sample D Male 31.0
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 31.6
Min nTPM: 30.4
Sample A Female 30.7
Sample B Female 31.3
Sample C Male 30.4
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 39.5
Min nTPM: 30.0
Sample A Male 39.5
Sample B Male 35.2
Sample C Female 30.0
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68191474 Antisense, RP_041129_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo