MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.6 nTPM
HPA Brain:47.8 nTPM
GTEx:93.6 nTPM
FANTOM5:86.7 Scaled Tags Per Million
Mouse:208.3 nTPM
Allen mouse:12.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
1827 Male, age 72, unknown 48.0
1870 Female, age 42, unknown 40.2
2411 Female, age 72, unknown 39.7
2019 Male, age 18, unknown 38.7
2828 Female, age 72, unknown 34.9
2666 Male, age 74, left hemisphere 33.5
2219 Male, age 76, both hemispheres 28.6
1833 Male, age 53, unknown 28.3
1830 Male, age 51, unknown 26.5
2586 Male, age 75, left hemisphere 22.5
Dorsal raphe nucleus
nTPM: 38.6
2298 Female, age 72, unknown 60.8
2047 Male, age 72, unknown 34.2
1828 Male, age 53, unknown 33.3
2750 Male, age 76, both hemispheres 32.8
2016 Female, age 72, unknown 32.0
Inferior colliculus
nTPM: 43.8
2097 Female, age 72, unknown 61.4
1848 Female, age 42, unknown 42.7
1890 Male, age 53, unknown 40.6
2849 Male, age 72, unknown 30.6
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Periaquaductal grey, anterior
nTPM: 47.8
1947 Male, age 18, unknown 53.7
1795 Male, age 51, unknown 46.4
2502 Female, age 75, unknown 43.3
Periaquaductal grey, dorsal
nTPM: 35.9
1840 Male, age 53, unknown 40.1
1831 Male, age 72, unknown 36.5
2464 Female, age 72, unknown 35.3
2850 Male, age 76, both hemispheres 31.5
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 40.7
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 34.9
Pretectal area
nTPM: 45.0
1816 Male, age 51, unknown 60.2
1944 Female, age 72, unknown 53.4
2007 Male, age 72, unknown 52.4
2273 Male, age 74, both hemispheres 47.8
2224 Female, age 72, unknown 46.0
2667 Female, age 75, unknown 44.4
1817 Female, age 42, unknown 44.3
2316 Male, age 76, right hemisphere 44.3
1815 Male, age 53, unknown 42.2
2825 Male, age 18, unknown 33.7
2407 Male, age 75, both hemispheres 26.2
Red nucleus
nTPM: 31.9
2725 Female, age 75, unknown 38.5
1821 Female, age 72, unknown 37.3
2503 Female, age 72, unknown 35.7
2785 Male, age 18, unknown 35.2
2227 Male, age 72, unknown 30.9
1954 Female, age 42, unknown 30.3
2769 Male, age 72, unknown 30.3
2823 Male, age 76, right hemisphere 30.0
1904 Male, age 53, unknown 29.3
2588 Male, age 74, left hemisphere 29.0
1865 Male, age 51, unknown 28.2
2584 Male, age 75, left hemisphere 28.1
Substantia nigra
nTPM: 34.5
1889 Female, age 72, unknown 43.3
2241 Male, age 72, unknown 40.0
1941 Male, age 53, unknown 39.5
2665 Male, age 74, both hemispheres 36.5
1851 Male, age 51, unknown 35.7
2409 Female, age 72, unknown 34.8
1916 Female, age 42, unknown 34.7
2590 Female, age 75, unknown 30.5
2583 Male, age 75, right hemisphere 27.6
2699 Male, age 18, unknown 22.6
Superior colliculus
nTPM: 38.3
2261 Male, age 18, unknown 50.1
2087 Female, age 72, unknown 45.1
1796 Male, age 53, unknown 44.7
1895 Male, age 76, right hemisphere 41.1
2587 Male, age 74, left hemisphere 38.8
2668 Female, age 75, unknown 37.6
1913 Female, age 42, unknown 36.8
1839 Male, age 51, unknown 36.0
1995 Male, age 72, unknown 29.7
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 34.0
2410 Female, age 72, unknown 37.2
1942 Male, age 51, unknown 35.5
1915 Female, age 42, unknown 35.0
2021 Male, age 53, unknown 34.0
2223 Female, age 72, unknown 33.6
2218 Male, age 76, both hemispheres 28.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.6
Samples: 183

Max nTPM: 246.0
Min nTPM: 51.2
Std nTPM: 31.3
Median nTPM: 85.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 246.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 237.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 213.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 203.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 194.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 182.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 176.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 155.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 151.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 140.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 137.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.7
FF:10158-103A5 76 years, female 86.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 208.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 208.3
Samples: 4

Max nTPM: 221.3
Min nTPM: 197.9
Sample A Male 221.3
Sample B Male 215.9
Sample C Female 197.9
Sample D Female 198.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69734875 Antisense, RP_050503_01_E03, Mouse strain C57BL/6J (56 days, male) 12.3

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