MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA Brain:27.7 nTPM
GTEx:38.6 nTPM
FANTOM5:129.3 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:8.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
1827 Male, age 72, unknown 28.0
1870 Female, age 42, unknown 27.6
2828 Female, age 72, unknown 26.4
2019 Male, age 18, unknown 25.9
2411 Female, age 72, unknown 24.1
1833 Male, age 53, unknown 21.0
2666 Male, age 74, left hemisphere 19.2
1830 Male, age 51, unknown 18.5
2586 Male, age 75, left hemisphere 18.5
2219 Male, age 76, both hemispheres 13.6
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 31.0
2016 Female, age 72, unknown 30.2
1828 Male, age 53, unknown 26.5
2047 Male, age 72, unknown 21.4
2750 Male, age 76, both hemispheres 18.8
Inferior colliculus
nTPM: 27.0
2097 Female, age 72, unknown 32.8
1890 Male, age 53, unknown 26.8
1848 Female, age 42, unknown 26.7
2849 Male, age 72, unknown 21.7
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 25.5
1795 Male, age 51, unknown 21.4
1947 Male, age 18, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 27.7
2850 Male, age 76, both hemispheres 29.9
2464 Female, age 72, unknown 28.6
1840 Male, age 53, unknown 28.0
1831 Male, age 72, unknown 24.4
Periaquaductal grey, lateral
nTPM: 26.0
2140 Male, age 76, both hemispheres 29.5
2053 Male, age 18, unknown 29.1
2272 Male, age 74, both hemispheres 19.4
Pretectal area
nTPM: 27.2
1816 Male, age 51, unknown 35.9
1944 Female, age 72, unknown 35.2
1815 Male, age 53, unknown 29.5
2667 Female, age 75, unknown 29.5
2007 Male, age 72, unknown 28.9
2316 Male, age 76, right hemisphere 28.2
1817 Female, age 42, unknown 27.9
2224 Female, age 72, unknown 25.0
2273 Male, age 74, both hemispheres 23.0
2825 Male, age 18, unknown 19.6
2407 Male, age 75, both hemispheres 16.6
Red nucleus
nTPM: 27.4
2503 Female, age 72, unknown 35.1
1954 Female, age 42, unknown 31.8
1821 Female, age 72, unknown 31.6
2823 Male, age 76, right hemisphere 30.0
1904 Male, age 53, unknown 29.1
2725 Female, age 75, unknown 27.4
2785 Male, age 18, unknown 27.2
2227 Male, age 72, unknown 26.8
2769 Male, age 72, unknown 26.6
1865 Male, age 51, unknown 24.3
2588 Male, age 74, left hemisphere 22.1
2584 Male, age 75, left hemisphere 16.5
Substantia nigra
nTPM: 21.7
1889 Female, age 72, unknown 32.4
1916 Female, age 42, unknown 24.4
2699 Male, age 18, unknown 23.4
2241 Male, age 72, unknown 22.0
1851 Male, age 51, unknown 20.9
2590 Female, age 75, unknown 20.8
2665 Male, age 74, both hemispheres 19.1
2409 Female, age 72, unknown 18.9
2583 Male, age 75, right hemisphere 18.9
1941 Male, age 53, unknown 15.6
Superior colliculus
nTPM: 24.9
2087 Female, age 72, unknown 32.3
1995 Male, age 72, unknown 28.4
2261 Male, age 18, unknown 27.9
1895 Male, age 76, right hemisphere 26.3
1913 Female, age 42, unknown 25.7
1796 Male, age 53, unknown 24.3
1839 Male, age 51, unknown 24.1
2587 Male, age 74, left hemisphere 22.6
2664 Male, age 75, both hemispheres 19.5
2668 Female, age 75, unknown 18.3
Ventral tegmental area
nTPM: 22.2
2410 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 24.3
1915 Female, age 42, unknown 23.6
1942 Male, age 51, unknown 21.5
2223 Female, age 72, unknown 19.2
2218 Male, age 76, both hemispheres 17.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.6
Samples: 183

Max nTPM: 116.7
Min nTPM: 9.3
Std nTPM: 18.7
Median nTPM: 35.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 116.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 115.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 108.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 97.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 92.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 90.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 75.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 73.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.3
FF:10158-103A5 76 years, female 129.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.6
Samples: 4

Max nTPM: 38.6
Min nTPM: 27.1
Sample A Female 38.6
Sample B Female 36.5
Sample C Male 32.3
Sample D Male 27.1
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 34.9
Sample C Male 46.1
Sample D Male 38.2
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 36.9
Min nTPM: 31.2
Sample B Female 31.2
Sample C Male 36.9
Sample D Male 31.7
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 47.9
Min nTPM: 32.9
Sample A Female 42.2
Sample B Female 44.1
Sample C Male 47.9
Sample D Male 32.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.4
Sample A Male 9.9
Sample B Male 7.4
Sample C Female 7.6
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70806049 Antisense, RP_050725_02_E07, Mouse strain C57BL/6J (56 days, male) 0.2
76135539 Antisense, RP_060518_04_H02, Mouse strain C57BL/6J (56 days, male) 0.2

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