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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:122.5 nTPM
FANTOM5:443.7 Scaled Tags Per Million
Pig:247.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007656Antibody CAB034931
Glial cells Not detectedMedium
Neuronal cells MediumMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.5
Samples: 300

Max nTPM: 413.1
Min nTPM: 1.2
Std nTPM: 77.1
Median nTPM: 116.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 413.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 331.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 314.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 314.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 292.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 288.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 271.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 261.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 260.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 260.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 259.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 259.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 259.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 258.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 258.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 257.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 255.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 253.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 253.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 249.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 248.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 246.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 245.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 244.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 244.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 241.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 236.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 235.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 235.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 234.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 231.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 231.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 231.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 228.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 225.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 224.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 221.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 220.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 219.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 219.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 218.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 217.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 215.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 214.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 210.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 208.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 204.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 204.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 203.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 202.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 202.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 199.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 198.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 197.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 196.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 196.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 196.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 195.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 192.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 192.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 190.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 189.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 188.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 188.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 186.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 186.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 186.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 185.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 183.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 182.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 182.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 179.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 178.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 176.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 175.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 175.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 174.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 174.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 173.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 171.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 171.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 170.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 169.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 169.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 169.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 168.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 168.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 167.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 167.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 166.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 166.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 166.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 166.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 165.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 164.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 163.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 163.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 160.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 158.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 158.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 158.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 155.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 155.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 155.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 154.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 150.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 150.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 149.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 146.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 145.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 144.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 141.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 138.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 136.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 136.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 135.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 135.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 135.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 135.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 134.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 133.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 133.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 132.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 132.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 131.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 130.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 130.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 130.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 129.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 128.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 128.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 127.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 127.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 127.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 127.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 122.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 122.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 121.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 121.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 119.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 119.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 118.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 118.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 117.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 116.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 114.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 112.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 112.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 112.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 111.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 109.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 108.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 107.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 105.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 103.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 103.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 103.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 102.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 101.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 99.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 97.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 97.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 96.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 96.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 96.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 95.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 93.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 91.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 91.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 89.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 88.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 88.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 88.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 87.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 86.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 86.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 83.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 82.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 80.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 80.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 79.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 78.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 77.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 77.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 75.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 75.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 74.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 72.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 72.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 70.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 69.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 68.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 67.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 67.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 67.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 65.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 65.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 64.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 62.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 61.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 60.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 59.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 58.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 58.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 57.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 55.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 55.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 52.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 52.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 51.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 51.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 51.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 50.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 50.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 46.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 45.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 44.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 44.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 44.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 43.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 43.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 43.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 42.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 42.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 41.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 38.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 37.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 35.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 35.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 35.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 34.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 33.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 32.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 32.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 32.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 32.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 29.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 29.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 28.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 28.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 28.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 27.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 27.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 27.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 26.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 26.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 24.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 23.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 23.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 23.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 22.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 22.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 20.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 20.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 19.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 17.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 14.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 14.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 13.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 13.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 9.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 9.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 5.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 5.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 4.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

443.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 443.7
FF:10164-103B2 76 years, female 443.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.1
Pig sample Sample description nTPM
Caudate
nTPM: 247.1
Samples: 4

Max nTPM: 293.8
Min nTPM: 196.8
Sample A Female 196.8
Sample B Female 269.3
Sample C Male 293.8
Sample D Male 228.5

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