MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.4 nTPM
HPA Brain:334.4 nTPM
GTEx:105.4 nTPM
FANTOM5:802.3 Scaled Tags Per Million
Pig:75.8 nTPM
Mouse:9.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 334.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 246.9
2411 Female, age 72, unknown 347.5
1830 Male, age 51, unknown 343.1
1870 Female, age 42, unknown 337.2
1833 Male, age 53, unknown 320.0
2019 Male, age 18, unknown 279.5
2828 Female, age 72, unknown 227.2
2219 Male, age 76, both hemispheres 180.0
1827 Male, age 72, unknown 178.5
2666 Male, age 74, left hemisphere 159.4
2586 Male, age 75, left hemisphere 96.1
Dorsal raphe nucleus
nTPM: 205.8
2750 Male, age 76, both hemispheres 398.4
2016 Female, age 72, unknown 224.9
1828 Male, age 53, unknown 177.1
2298 Female, age 72, unknown 117.0
2047 Male, age 72, unknown 111.5
Inferior colliculus
nTPM: 175.6
1848 Female, age 42, unknown 191.5
2849 Male, age 72, unknown 173.3
1890 Male, age 53, unknown 173.1
2097 Female, age 72, unknown 164.5
Median raphe nucleus
nTPM: 172.7
2220 Male, age 76, midline 172.7
Periaquaductal grey, anterior
nTPM: 136.5
1947 Male, age 18, unknown 157.3
2502 Female, age 75, unknown 149.0
1795 Male, age 51, unknown 103.2
Periaquaductal grey, dorsal
nTPM: 127.5
2464 Female, age 72, unknown 219.4
1831 Male, age 72, unknown 127.9
1840 Male, age 53, unknown 83.8
2850 Male, age 76, both hemispheres 78.8
Periaquaductal grey, lateral
nTPM: 136.7
2272 Male, age 74, both hemispheres 172.6
2053 Male, age 18, unknown 154.0
2140 Male, age 76, both hemispheres 83.5
Pretectal area
nTPM: 164.9
2316 Male, age 76, right hemisphere 254.2
1815 Male, age 53, unknown 224.5
2273 Male, age 74, both hemispheres 184.9
1817 Female, age 42, unknown 172.9
2407 Male, age 75, both hemispheres 168.9
2825 Male, age 18, unknown 165.7
2007 Male, age 72, unknown 157.8
2224 Female, age 72, unknown 152.9
2667 Female, age 75, unknown 138.6
1944 Female, age 72, unknown 104.4
1816 Male, age 51, unknown 89.5
Red nucleus
nTPM: 334.4
1821 Female, age 72, unknown 430.2
2823 Male, age 76, right hemisphere 423.9
1865 Male, age 51, unknown 419.4
1904 Male, age 53, unknown 407.5
2503 Female, age 72, unknown 361.7
1954 Female, age 42, unknown 348.6
2769 Male, age 72, unknown 348.6
2227 Male, age 72, unknown 347.4
2785 Male, age 18, unknown 325.4
2588 Male, age 74, left hemisphere 223.5
2725 Female, age 75, unknown 215.3
2584 Male, age 75, left hemisphere 161.0
Substantia nigra
nTPM: 198.7
2409 Female, age 72, unknown 311.2
2590 Female, age 75, unknown 255.3
1851 Male, age 51, unknown 230.2
1889 Female, age 72, unknown 213.4
2241 Male, age 72, unknown 208.4
2583 Male, age 75, right hemisphere 195.9
2699 Male, age 18, unknown 186.1
1916 Female, age 42, unknown 149.0
1941 Male, age 53, unknown 145.3
2665 Male, age 74, both hemispheres 92.3
Superior colliculus
nTPM: 216.4
1913 Female, age 42, unknown 329.6
1895 Male, age 76, right hemisphere 305.4
1995 Male, age 72, unknown 300.7
2587 Male, age 74, left hemisphere 275.9
1839 Male, age 51, unknown 229.7
2668 Female, age 75, unknown 226.2
1796 Male, age 53, unknown 164.3
2087 Female, age 72, unknown 132.6
2261 Male, age 18, unknown 113.0
2664 Male, age 75, both hemispheres 86.8
Ventral tegmental area
nTPM: 222.4
2410 Female, age 72, unknown 329.2
2223 Female, age 72, unknown 271.2
2021 Male, age 53, unknown 197.3
1915 Female, age 42, unknown 187.0
1942 Male, age 51, unknown 179.9
2218 Male, age 76, both hemispheres 170.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.4
Samples: 183

Max nTPM: 371.9
Min nTPM: 5.5
Std nTPM: 60.7
Median nTPM: 85.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 371.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 371.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 364.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 252.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 243.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 241.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 232.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 215.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 213.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 212.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 203.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 802.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 802.3
FF:10158-103A5 76 years, female 802.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 100.4
Min nTPM: 39.5
Sample A Female 56.5
Sample B Female 39.5
Sample C Male 48.5
Sample D Male 100.4
Midbrain
nTPM: 75.8
Samples: 4

Max nTPM: 174.7
Min nTPM: 29.9
Sample A Female 174.7
Sample B Female 67.1
Sample C Male 31.3
Sample D Male 29.9
Periaqueductal gray
nTPM: 41.8
Samples: 3

Max nTPM: 58.8
Min nTPM: 29.3
Sample B Female 58.8
Sample C Male 29.3
Sample D Male 37.4
Superior colliculi
nTPM: 47.6
Samples: 4

Max nTPM: 55.1
Min nTPM: 28.3
Sample A Female 53.1
Sample B Female 28.3
Sample C Male 55.1
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.2
Sample A Male 13.0
Sample B Male 8.2
Sample C Female 8.2
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
583855 Antisense, RP_040831_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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