MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.5 nTPM
HPA Brain:187.0 nTPM
GTEx:77.5 nTPM
FANTOM5:704.7 Scaled Tags Per Million
Pig:96.5 nTPM
Mouse:93.5 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 187.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.9
1870 Female, age 42, unknown 216.8
2411 Female, age 72, unknown 213.7
1830 Male, age 51, unknown 201.8
1833 Male, age 53, unknown 175.9
2828 Female, age 72, unknown 131.7
2019 Male, age 18, unknown 129.8
1827 Male, age 72, unknown 120.3
2219 Male, age 76, both hemispheres 108.1
2666 Male, age 74, left hemisphere 104.7
2586 Male, age 75, left hemisphere 75.9
Dorsal raphe nucleus
nTPM: 111.8
2750 Male, age 76, both hemispheres 215.4
2016 Female, age 72, unknown 113.7
1828 Male, age 53, unknown 97.2
2047 Male, age 72, unknown 67.7
2298 Female, age 72, unknown 64.9
Inferior colliculus
nTPM: 105.7
2097 Female, age 72, unknown 115.9
1890 Male, age 53, unknown 108.7
1848 Female, age 42, unknown 107.0
2849 Male, age 72, unknown 91.1
Median raphe nucleus
nTPM: 86.2
2220 Male, age 76, midline 86.2
Periaquaductal grey, anterior
nTPM: 110.4
1947 Male, age 18, unknown 160.6
2502 Female, age 75, unknown 99.0
1795 Male, age 51, unknown 71.6
Periaquaductal grey, dorsal
nTPM: 73.9
2464 Female, age 72, unknown 118.9
1831 Male, age 72, unknown 72.4
1840 Male, age 53, unknown 56.7
2850 Male, age 76, both hemispheres 47.7
Periaquaductal grey, lateral
nTPM: 84.8
2272 Male, age 74, both hemispheres 111.9
2053 Male, age 18, unknown 94.5
2140 Male, age 76, both hemispheres 47.9
Pretectal area
nTPM: 95.5
2316 Male, age 76, right hemisphere 147.0
1815 Male, age 53, unknown 124.4
2273 Male, age 74, both hemispheres 111.7
2825 Male, age 18, unknown 106.2
2407 Male, age 75, both hemispheres 96.4
1817 Female, age 42, unknown 96.3
2007 Male, age 72, unknown 94.8
2224 Female, age 72, unknown 92.7
1944 Female, age 72, unknown 61.8
2667 Female, age 75, unknown 61.8
1816 Male, age 51, unknown 57.0
Red nucleus
nTPM: 187.0
1865 Male, age 51, unknown 250.3
1821 Female, age 72, unknown 228.6
1904 Male, age 53, unknown 221.8
1954 Female, age 42, unknown 199.2
2769 Male, age 72, unknown 198.4
2227 Male, age 72, unknown 194.7
2823 Male, age 76, right hemisphere 192.1
2503 Female, age 72, unknown 191.2
2725 Female, age 75, unknown 162.0
2785 Male, age 18, unknown 152.5
2588 Male, age 74, left hemisphere 143.4
2584 Male, age 75, left hemisphere 110.3
Substantia nigra
nTPM: 110.7
2590 Female, age 75, unknown 160.0
2409 Female, age 72, unknown 136.4
1851 Male, age 51, unknown 132.3
1889 Female, age 72, unknown 123.2
2583 Male, age 75, right hemisphere 116.5
2241 Male, age 72, unknown 112.4
1941 Male, age 53, unknown 92.8
1916 Female, age 42, unknown 90.3
2699 Male, age 18, unknown 83.7
2665 Male, age 74, both hemispheres 59.0
Superior colliculus
nTPM: 133.1
1913 Female, age 42, unknown 213.5
1995 Male, age 72, unknown 186.2
1895 Male, age 76, right hemisphere 174.5
2587 Male, age 74, left hemisphere 166.1
2668 Female, age 75, unknown 143.6
1839 Male, age 51, unknown 134.3
1796 Male, age 53, unknown 101.2
2261 Male, age 18, unknown 95.5
2087 Female, age 72, unknown 67.6
2664 Male, age 75, both hemispheres 48.7
Ventral tegmental area
nTPM: 133.7
2223 Female, age 72, unknown 200.6
2410 Female, age 72, unknown 169.3
1915 Female, age 42, unknown 114.8
1942 Male, age 51, unknown 111.7
2021 Male, age 53, unknown 106.5
2218 Male, age 76, both hemispheres 99.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.5
Samples: 183

Max nTPM: 271.7
Min nTPM: 17.4
Std nTPM: 46.8
Median nTPM: 63.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 271.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 242.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 238.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 236.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 228.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 217.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 211.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 192.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 188.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 181.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 171.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 704.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 704.7
FF:10158-103A5 76 years, female 704.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.4
Samples: 4

Max nTPM: 137.4
Min nTPM: 58.7
Sample A Female 99.8
Sample B Female 58.7
Sample C Male 89.8
Sample D Male 137.4
Midbrain
nTPM: 96.5
Samples: 4

Max nTPM: 134.1
Min nTPM: 70.2
Sample A Female 134.1
Sample B Female 99.4
Sample C Male 70.2
Sample D Male 82.2
Periaqueductal gray
nTPM: 80.4
Samples: 3

Max nTPM: 87.7
Min nTPM: 69.4
Sample B Female 84.0
Sample C Male 69.4
Sample D Male 87.7
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 108.4
Min nTPM: 32.9
Sample A Female 84.7
Sample B Female 32.9
Sample C Male 87.1
Sample D Male 108.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.5
Samples: 4

Max nTPM: 105.4
Min nTPM: 82.7
Sample A Male 82.7
Sample B Male 92.9
Sample C Female 105.4
Sample D Female 93.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
76003522 Antisense, RP_060608_02_F03, Mouse strain C57BL/6J (56 days, male) 0.8

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