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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:749.6 nTPM
HPA Brain:332.6 nTPM
GTEx:749.6 nTPM
FANTOM5:449.9 Scaled Tags Per Million
Pig:440.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 288.3
1981 Female, age 72, midline 361.8
2816 Male, age 47, midline 306.4
2048 Male, age 55, midline 283.8
2194 Female, age 79, both hemispheres 275.1
2565 Male, age 75, midline 214.5
Cervical spinal cord, dorsal horn
nTPM: 325.7
2296 Male, age 66, both hemispheres 560.6
2173 Female, age 72, unknown 474.7
2069 Male, age 47, both hemispheres 297.5
1877 Male, age 55, unknown 285.4
2721 Male, age 90, both hemispheres 177.5
2297 Male, age 75, both hemispheres 158.5
Cervical spinal cord, ventral horn
nTPM: 332.6
2098 Female, age 72, unknown 384.6
2068 Male, age 55, unknown 381.8
2480 Male, age 75, both hemispheres 316.1
2809 Male, age 90, both hemispheres 312.4
2820 Female, age 79, both hemispheres 309.8
2295 Male, age 66, both hemispheres 291.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

749.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 749.6
Samples: 204

Max nTPM: 1384.3
Min nTPM: 186.2
Std nTPM: 232.1
Median nTPM: 760.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1384.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1359.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1310.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1306.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1269.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1193.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1176.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1172.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1105.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1097.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1089.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1088.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1084.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1069.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1054.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1047.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1044.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1038.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1037.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1021.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1020.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1019.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1014.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1010.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1001.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 997.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 988.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 983.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 969.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 963.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 960.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 959.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 956.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 955.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 950.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 948.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 946.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 940.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 939.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 938.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 935.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 934.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 934.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 933.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 930.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 929.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 927.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 924.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 921.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 917.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 916.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 914.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 913.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 913.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 910.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 904.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 902.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 896.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 894.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 890.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 885.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 885.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 876.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 874.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 870.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 868.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 864.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 857.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 856.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 850.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 848.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 846.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 841.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 832.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 830.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 829.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 826.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 826.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 823.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 820.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 817.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 815.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 812.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 812.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 811.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 810.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 809.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 800.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 800.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 800.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 799.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 790.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 790.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 788.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 782.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 778.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 776.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 776.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 775.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 771.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 764.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 762.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 758.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 754.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 753.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 750.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 749.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 745.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 744.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 740.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 737.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 736.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 734.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 733.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 722.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 720.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 719.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 717.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 714.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 714.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 713.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 709.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 707.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 707.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 704.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 701.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 689.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 688.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 688.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 681.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 680.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 680.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 680.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 677.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 677.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 675.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 671.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 667.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 661.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 658.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 657.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 648.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 644.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 636.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 629.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 628.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 625.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 623.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 621.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 616.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 614.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 609.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 606.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 596.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 592.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 588.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 584.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 575.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 573.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 569.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 565.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 562.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 552.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 550.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 550.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 544.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 534.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 533.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 523.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 521.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 520.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 519.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 505.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 503.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 502.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 479.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 474.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 457.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 446.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 436.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 429.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 426.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 424.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 414.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 413.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 401.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 395.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 383.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 383.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 382.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 372.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 360.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 358.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 357.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 324.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 322.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 293.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 291.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 285.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 269.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 251.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 238.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 233.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 186.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

449.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 449.9
FF:10181-103D1 60 years, female 510.4
FF:10159-103A6 76 years, female 389.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

440.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 335.7
Samples: 4

Max nTPM: 362.2
Min nTPM: 309.3
Sample A Female 317.6
Sample B Female 362.2
Sample C Male 309.3
Sample D Male 353.6
Ventral spinal cord
nTPM: 440.0
Samples: 4

Max nTPM: 556.9
Min nTPM: 352.1
Sample A Female 395.8
Sample B Female 455.3
Sample C Male 352.1
Sample D Male 556.9

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