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ALDH7A1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ALDH7A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:74.9 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:46.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023296Antibody HPA053675
Glial cells HighMedium
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.9
Samples: 300

Max nTPM: 203.8
Min nTPM: 9.3
Std nTPM: 33.7
Median nTPM: 70.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 203.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 189.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 185.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 179.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 173.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 164.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 159.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 159.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 159.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 158.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 151.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 146.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 143.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 141.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 140.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 139.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 137.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 136.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 134.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 131.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 131.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 131.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 126.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 122.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 122.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 121.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 121.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 118.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 118.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 117.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 117.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 116.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 116.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 115.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 114.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 113.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 111.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 111.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 110.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 109.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 109.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 108.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 107.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 107.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 104.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 104.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 103.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 103.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 103.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 103.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 103.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 101.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 101.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 100.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 100.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 98.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 98.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 98.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 98.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 98.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 98.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 96.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 95.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 95.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 95.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 95.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 94.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 94.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 94.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 92.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 92.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 92.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 92.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 91.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 91.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 91.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 91.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 91.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 90.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 89.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 89.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 88.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 88.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 88.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 88.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 88.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 88.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 88.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 87.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 87.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 87.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 86.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 86.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 86.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 85.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 85.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 84.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 84.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 83.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 83.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 82.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 82.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 82.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 81.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 81.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 80.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 80.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 80.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 79.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 79.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 79.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 79.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 78.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 78.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 77.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 77.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 77.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 76.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 76.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 76.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 76.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 76.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 75.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 74.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 74.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 74.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 74.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 73.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 72.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 72.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 72.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 72.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 72.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 72.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 72.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 71.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 71.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 71.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 70.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 70.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 70.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 70.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 69.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 69.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 69.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 69.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 68.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 68.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 68.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 67.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 67.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 67.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 67.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 65.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 65.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 65.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 64.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 64.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 64.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 63.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 63.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 63.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 63.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 63.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 62.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 62.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 62.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 62.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 62.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 62.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 61.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 61.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 61.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 60.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 60.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 60.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 60.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 60.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 59.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 59.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 59.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 59.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 59.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 58.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 57.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 57.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 57.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 57.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 56.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 56.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 55.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 55.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 55.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 54.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 54.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 54.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 53.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 53.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 53.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 52.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 52.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 52.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 51.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 51.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 51.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 51.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 51.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 50.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 50.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 49.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 49.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 49.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 49.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 49.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 48.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 48.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 48.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 48.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 48.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 48.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 46.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 46.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 46.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 46.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 45.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 45.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 45.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 45.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 44.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 44.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 44.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 44.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 44.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 44.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 43.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 43.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 43.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 42.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 41.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 41.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 40.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 40.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 40.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 39.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 39.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 39.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 39.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 39.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 39.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 38.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 38.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 37.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 37.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 35.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 35.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 34.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 34.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 33.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 33.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 33.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 32.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 31.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 30.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 29.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 29.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 27.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 26.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 26.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 26.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 25.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 22.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 16.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 15.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 11.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 9.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 9.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.7
FF:10164-103B2 76 years, female 113.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.6
Pig sample Sample description nTPM
Caudate
nTPM: 46.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 41.0
Sample A Female 47.7
Sample B Female 48.3
Sample C Male 49.5
Sample D Male 41.0

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