MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:33.7 nTPM
GTEx:10.0 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:23.2 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2411 Female, age 72, unknown 36.3
2019 Male, age 18, unknown 34.4
1830 Male, age 51, unknown 33.6
1833 Male, age 53, unknown 33.6
1870 Female, age 42, unknown 32.7
2219 Male, age 76, both hemispheres 32.1
2828 Female, age 72, unknown 27.1
1827 Male, age 72, unknown 24.7
2666 Male, age 74, left hemisphere 24.7
2586 Male, age 75, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 34.0
1828 Male, age 53, unknown 28.6
2016 Female, age 72, unknown 28.1
2298 Female, age 72, unknown 26.7
2047 Male, age 72, unknown 26.5
Inferior colliculus
nTPM: 26.6
2097 Female, age 72, unknown 28.9
1890 Male, age 53, unknown 28.4
1848 Female, age 42, unknown 27.0
2849 Male, age 72, unknown 22.2
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Periaquaductal grey, anterior
nTPM: 24.1
1947 Male, age 18, unknown 25.8
2502 Female, age 75, unknown 25.6
1795 Male, age 51, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 23.9
2464 Female, age 72, unknown 28.2
1831 Male, age 72, unknown 23.4
2850 Male, age 76, both hemispheres 22.9
1840 Male, age 53, unknown 21.2
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 23.3
2053 Male, age 18, unknown 23.0
2140 Male, age 76, both hemispheres 20.1
Pretectal area
nTPM: 25.4
1815 Male, age 53, unknown 29.2
1817 Female, age 42, unknown 28.0
2273 Male, age 74, both hemispheres 26.7
2007 Male, age 72, unknown 26.3
2316 Male, age 76, right hemisphere 26.1
2224 Female, age 72, unknown 25.2
1944 Female, age 72, unknown 24.8
2407 Male, age 75, both hemispheres 24.2
1816 Male, age 51, unknown 23.7
2667 Female, age 75, unknown 22.6
2825 Male, age 18, unknown 22.4
Red nucleus
nTPM: 33.7
1904 Male, age 53, unknown 39.7
1821 Female, age 72, unknown 39.3
2503 Female, age 72, unknown 37.5
1865 Male, age 51, unknown 37.0
1954 Female, age 42, unknown 36.9
2785 Male, age 18, unknown 33.8
2227 Male, age 72, unknown 33.2
2823 Male, age 76, right hemisphere 33.1
2769 Male, age 72, unknown 32.4
2588 Male, age 74, left hemisphere 29.6
2725 Female, age 75, unknown 29.4
2584 Male, age 75, left hemisphere 22.4
Substantia nigra
nTPM: 31.2
2241 Male, age 72, unknown 42.9
2409 Female, age 72, unknown 37.3
1916 Female, age 42, unknown 33.6
1851 Male, age 51, unknown 33.2
2590 Female, age 75, unknown 30.9
2699 Male, age 18, unknown 28.9
1889 Female, age 72, unknown 28.6
1941 Male, age 53, unknown 27.6
2583 Male, age 75, right hemisphere 27.1
2665 Male, age 74, both hemispheres 22.3
Superior colliculus
nTPM: 26.6
1913 Female, age 42, unknown 31.4
1895 Male, age 76, right hemisphere 31.2
2668 Female, age 75, unknown 31.1
1995 Male, age 72, unknown 29.1
2587 Male, age 74, left hemisphere 29.1
1839 Male, age 51, unknown 26.1
2087 Female, age 72, unknown 24.4
2261 Male, age 18, unknown 23.9
1796 Male, age 53, unknown 23.2
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 36.4
2218 Male, age 76, both hemispheres 32.7
2223 Female, age 72, unknown 30.7
1915 Female, age 42, unknown 29.3
1942 Male, age 51, unknown 26.8
2021 Male, age 53, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 183

Max nTPM: 20.0
Min nTPM: 3.9
Std nTPM: 2.7
Median nTPM: 9.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 17.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 17.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 16.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 15.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 15.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 14.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 34.3
Sample A Female 39.9
Sample B Female 34.3
Sample C Male 34.8
Sample D Male 47.4
Midbrain
nTPM: 40.6
Samples: 4

Max nTPM: 61.5
Min nTPM: 31.0
Sample A Female 61.5
Sample B Female 34.2
Sample C Male 35.8
Sample D Male 31.0
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 32.3
Min nTPM: 28.0
Sample B Female 32.3
Sample C Male 28.2
Sample D Male 28.0
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 37.5
Min nTPM: 33.8
Sample A Female 35.7
Sample B Female 33.8
Sample C Male 37.5
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.6
Sample A Male 20.6
Sample B Male 24.2
Sample C Female 25.2
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68191114 Antisense, RP_041122_02_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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