MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.1 nTPM
HPA Brain:244.2 nTPM
GTEx:112.1 nTPM
FANTOM5:250.6 Scaled Tags Per Million
Pig:106.0 nTPM
Mouse:16.3 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 244.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.8
2586 Male, age 75, left hemisphere 275.8
1830 Male, age 51, unknown 213.5
1833 Male, age 53, unknown 205.6
2666 Male, age 74, left hemisphere 203.2
2019 Male, age 18, unknown 202.8
2828 Female, age 72, unknown 202.0
2411 Female, age 72, unknown 191.4
1870 Female, age 42, unknown 184.7
1827 Male, age 72, unknown 145.6
2219 Male, age 76, both hemispheres 133.1
Dorsal raphe nucleus
nTPM: 135.1
2750 Male, age 76, both hemispheres 186.7
2016 Female, age 72, unknown 160.1
1828 Male, age 53, unknown 142.8
2047 Male, age 72, unknown 101.7
2298 Female, age 72, unknown 84.1
Inferior colliculus
nTPM: 131.7
1890 Male, age 53, unknown 150.7
2849 Male, age 72, unknown 142.4
1848 Female, age 42, unknown 138.1
2097 Female, age 72, unknown 95.5
Median raphe nucleus
nTPM: 106.4
2220 Male, age 76, midline 106.4
Periaquaductal grey, anterior
nTPM: 130.9
2502 Female, age 75, unknown 162.9
1947 Male, age 18, unknown 116.2
1795 Male, age 51, unknown 113.6
Periaquaductal grey, dorsal
nTPM: 111.3
2464 Female, age 72, unknown 145.0
1831 Male, age 72, unknown 113.9
2850 Male, age 76, both hemispheres 100.5
1840 Male, age 53, unknown 85.8
Periaquaductal grey, lateral
nTPM: 110.6
2053 Male, age 18, unknown 125.2
2140 Male, age 76, both hemispheres 108.6
2272 Male, age 74, both hemispheres 97.9
Pretectal area
nTPM: 128.3
2316 Male, age 76, right hemisphere 177.0
1815 Male, age 53, unknown 171.2
2407 Male, age 75, both hemispheres 167.8
1817 Female, age 42, unknown 142.0
2007 Male, age 72, unknown 136.0
2825 Male, age 18, unknown 135.9
2667 Female, age 75, unknown 115.4
1816 Male, age 51, unknown 96.2
1944 Female, age 72, unknown 92.4
2224 Female, age 72, unknown 92.4
2273 Male, age 74, both hemispheres 84.9
Red nucleus
nTPM: 244.2
2823 Male, age 76, right hemisphere 272.2
1904 Male, age 53, unknown 270.9
2769 Male, age 72, unknown 267.3
1865 Male, age 51, unknown 265.0
2588 Male, age 74, left hemisphere 262.8
2227 Male, age 72, unknown 257.6
2503 Female, age 72, unknown 256.8
2785 Male, age 18, unknown 235.2
1821 Female, age 72, unknown 233.7
1954 Female, age 42, unknown 231.8
2584 Male, age 75, left hemisphere 202.2
2725 Female, age 75, unknown 174.6
Substantia nigra
nTPM: 153.7
2699 Male, age 18, unknown 184.4
2665 Male, age 74, both hemispheres 177.5
2583 Male, age 75, right hemisphere 174.4
2409 Female, age 72, unknown 166.5
1851 Male, age 51, unknown 165.2
2590 Female, age 75, unknown 162.2
1889 Female, age 72, unknown 136.8
2241 Male, age 72, unknown 134.4
1916 Female, age 42, unknown 119.9
1941 Male, age 53, unknown 115.9
Superior colliculus
nTPM: 163.8
1995 Male, age 72, unknown 207.3
1913 Female, age 42, unknown 195.8
2664 Male, age 75, both hemispheres 188.1
2668 Female, age 75, unknown 177.8
1839 Male, age 51, unknown 173.0
1895 Male, age 76, right hemisphere 168.8
2587 Male, age 74, left hemisphere 165.3
1796 Male, age 53, unknown 135.8
2261 Male, age 18, unknown 115.1
2087 Female, age 72, unknown 110.7
Ventral tegmental area
nTPM: 152.2
2223 Female, age 72, unknown 180.2
2410 Female, age 72, unknown 168.0
1942 Male, age 51, unknown 155.4
2021 Male, age 53, unknown 141.0
1915 Female, age 42, unknown 138.2
2218 Male, age 76, both hemispheres 130.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 112.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.1
Samples: 183

Max nTPM: 431.8
Min nTPM: 22.0
Std nTPM: 53.0
Median nTPM: 105.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 431.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 253.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 247.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 242.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 222.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 217.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 216.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 206.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 202.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 201.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 199.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 250.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 250.6
FF:10158-103A5 76 years, female 250.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 106.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.0
Samples: 4

Max nTPM: 145.2
Min nTPM: 91.2
Sample A Female 95.2
Sample B Female 91.2
Sample C Male 92.5
Sample D Male 145.2
Midbrain
nTPM: 97.9
Samples: 4

Max nTPM: 146.4
Min nTPM: 67.4
Sample A Female 146.4
Sample B Female 106.0
Sample C Male 67.4
Sample D Male 71.6
Periaqueductal gray
nTPM: 72.4
Samples: 3

Max nTPM: 87.7
Min nTPM: 61.2
Sample B Female 87.7
Sample C Male 61.2
Sample D Male 68.2
Superior colliculi
nTPM: 87.7
Samples: 4

Max nTPM: 99.5
Min nTPM: 74.6
Sample A Female 92.6
Sample B Female 74.6
Sample C Male 84.2
Sample D Male 99.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.0
Sample A Male 18.3
Sample B Male 16.0
Sample C Female 15.0
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69202490 Antisense, RP_050324_03_G04, Mouse strain C57BL/6J (56 days, male) 0.6

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