HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:95.0 nTPM
HPA Brain:90.0 nTPM
GTEx:95.0 nTPM
FANTOM5:109.1 Scaled Tags Per Million
Pig:178.9 nTPM
Mouse:249.9 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043475
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 90.0
Sample id Sample description nTPM
Hippocampus
nTPM: 76.8
1898 Male, age 80, left hemisphere 108.9
1855 Male, age 76, left hemisphere 73.6
2529 Female, age 94, left hemisphere 73.0
2148 Female, age 91, left hemisphere 71.9
1911 Female, age 85, right hemisphere 68.2
2621 Female, age 67, right hemisphere 65.1
Dentate gyrus
nTPM: 77.2
1927 Female, age 91, both hemispheres 94.7
2010 Male, age 76, both hemispheres 88.5
2528 Male, age 74, both hemispheres 81.3
2530 Female, age 94, left hemisphere 70.2
2246 Female, age 85, both hemispheres 69.7
2531 Female, age 67, both hemispheres 58.7
Entorhinal gyrus
nTPM: 75.1
2764 Male, age 80, right hemisphere 88.7
1938 Female, age 85, left hemisphere 87.3
2117 Female, age 91, right hemisphere 82.6
1787 Male, age 76, left hemisphere 68.1
2613 Female, age 94, left hemisphere 63.2
2686 Male, age 75, right hemisphere 60.5
Hippocampus, CA1
nTPM: 90.0
2749 Male, age 80, left hemisphere 124.3
1873 Female, age 85, both hemispheres 94.0
2527 Male, age 74, both hemispheres 84.1
2082 Female, age 91, right hemisphere 77.7
2045 Male, age 76, both hemispheres 69.6
Hippocampus, CA2
nTPM: 84.1
1963 Male, age 80, left hemisphere 103.9
2249 Male, age 74, both hemispheres 99.3
1892 Male, age 76, both hemispheres 98.6
2113 Female, age 91, right hemisphere 73.6
1940 Female, age 85, left hemisphere 67.8
2437 Female, age 94, left hemisphere 61.3
Hippocampus, CA3
nTPM: 82.6
2436 Male, age 74, both hemispheres 101.5
2137 Male, age 80, left hemisphere 99.9
1867 Male, age 76, both hemispheres 93.3
1891 Female, age 85, both hemispheres 79.3
2620 Female, age 94, left hemisphere 69.4
2861 Female, age 67, both hemispheres 52.5
Parahippocampal cortex
nTPM: 75.9
1850 Male, age 80, both hemispheres 93.6
1990 Female, age 91, right hemisphere 91.2
1933 Female, age 85, both hemispheres 88.5
2250 Female, age 67, right hemisphere 83.6
2018 Male, age 76, both hemispheres 75.1
2245 Female, age 91, both hemispheres 72.2
2532 Female, age 72, left hemisphere 69.0
2693 Female, age 94, both hemispheres 67.9
2622 Female, age 67, right hemisphere 60.8
2692 Male, age 74, both hemispheres 56.9
Perirhinal gyrus
nTPM: 87.8
1847 Female, age 91, left hemisphere 105.6
1794 Male, age 80, right hemisphere 96.1
1841 Female, age 85, right hemisphere 92.1
2521 Female, age 94, right hemisphere 75.0
2848 Male, age 76, right hemisphere 70.2
Subiculum
nTPM: 74.3
1901 Male, age 80, both hemispheres 90.2
1977 Female, age 85, both hemispheres 88.7
2619 Male, age 74, both hemispheres 72.0
2729 Female, age 91, right hemisphere 71.3
2042 Male, age 76, both hemispheres 66.9
2438 Female, age 94, left hemisphere 56.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 95.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 95.0
Samples: 255

Max nTPM: 190.2
Min nTPM: 54.4
Std nTPM: 21.9
Median nTPM: 91.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 190.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 155.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 151.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 143.3
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 142.6
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 141.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 139.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 139.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 138.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 137.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 137.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.1
FF:10169-103B7 60 years, female 137.0
FF:10153-102I9 76 years, female 81.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 178.9
Pig sample Sample description nTPM
Subiculum
nTPM: 150.7
Samples: 4

Max nTPM: 191.7
Min nTPM: 133.3
Sample A Female 191.7
Sample B Female 133.3
Sample C Male 144.2
Sample D Male 133.4
Dorsal hippocampus
nTPM: 178.9
Samples: 4

Max nTPM: 229.6
Min nTPM: 134.4
Sample A Female 229.6
Sample B Female 166.9
Sample C Male 184.6
Sample D Male 134.4
Entorhinal cortex
nTPM: 149.9
Samples: 4

Max nTPM: 175.3
Min nTPM: 126.9
Sample A Female 153.0
Sample B Female 175.3
Sample C Male 144.4
Sample D Male 126.9
Ventral hippocampus
nTPM: 167.7
Samples: 4

Max nTPM: 191.9
Min nTPM: 117.3
Sample A Female 191.9
Sample B Female 117.3
Sample C Male 189.3
Sample D Male 172.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 249.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 239.0
Samples: 4

Max nTPM: 242.2
Min nTPM: 234.6
Sample A Male 237.3
Sample B Male 242.2
Sample C Female 242.0
Sample D Female 234.6
Hippocampal formation
nTPM: 249.9
Samples: 4

Max nTPM: 267.0
Min nTPM: 234.9
Sample A Male 267.0
Sample B Male 245.9
Sample C Female 234.9
Sample D Female 251.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.5
1888 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 7.5
1889 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo