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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:97.6 nTPM
HPA Brain:53.6 nTPM
GTEx:97.6 nTPM
FANTOM5:123.1 Scaled Tags Per Million
Pig:99.0 nTPM
Mouse:106.3 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.6
Sample id Sample description nTPM
Amygdala
nTPM: 53.6
2514 Male, age 75, right hemisphere 60.1
2695 Female, age 67, right hemisphere 55.7
2814 Male, age 76, right hemisphere 55.7
1987 Female, age 91, left hemisphere 52.9
2517 Female, age 94, left hemisphere 43.6
Basal amygdala
nTPM: 38.6
2609 Male, age 75, right hemisphere 50.8
2110 Male, age 80, left hemisphere 44.8
1955 Male, age 76, both hemispheres 42.1
2243 Female, age 91, right hemisphere 36.4
2685 Female, age 94, left hemisphere 34.3
2827 Female, age 67, right hemisphere 23.1
Central amygdala
nTPM: 45.0
2515 Male, age 75, right hemisphere 55.6
1905 Male, age 76, both hemispheres 55.0
2826 Female, age 94, left hemisphere 39.0
2239 Male, age 80, left hemisphere 38.4
2701 Female, age 91, right hemisphere 36.9
Corticomedial amygdala
nTPM: 40.2
2428 Male, age 75, right hemisphere 56.6
2829 Male, age 80, left hemisphere 48.4
2429 Female, age 94, left hemisphere 41.4
2240 Male, age 76, both hemispheres 37.9
2242 Female, age 91, right hemisphere 35.2
2535 Female, age 67, right hemisphere 21.5
Lateral amygdala
nTPM: 40.8
1883 Male, age 76, both hemispheres 55.3
2516 Male, age 75, right hemisphere 54.9
2534 Female, age 94, left hemisphere 43.9
2256 Male, age 80, left hemisphere 33.4
2255 Female, age 91, right hemisphere 30.8
2830 Female, age 67, right hemisphere 26.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 97.6
Samples: 181

Max nTPM: 212.4
Min nTPM: 45.5
Std nTPM: 24.4
Median nTPM: 93.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 212.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 173.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 172.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 147.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 147.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 144.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 141.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 140.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 139.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 138.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 137.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 136.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 136.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 136.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 133.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 133.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 132.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 131.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 131.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 126.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 126.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 126.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 125.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 122.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 121.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 121.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 121.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 120.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 117.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 117.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 116.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 116.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 115.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 113.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 113.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 113.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 112.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 112.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 111.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 109.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 109.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 108.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 108.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 107.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 106.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 106.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 106.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 106.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 106.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 105.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 104.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 104.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 103.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 103.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 102.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 102.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 101.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 101.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 99.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 98.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 97.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 97.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 96.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 96.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 96.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 95.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 94.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 94.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 94.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 93.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 93.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 92.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 92.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 91.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 91.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 91.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 91.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 90.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 90.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 90.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 88.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 88.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 88.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 87.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 87.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 87.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 87.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 87.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 86.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 86.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 86.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 86.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 86.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 85.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 85.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 85.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 85.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 85.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 84.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 83.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 83.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 83.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 83.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 83.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 82.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 82.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 81.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 79.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 79.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 79.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 77.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 77.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 76.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 76.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 75.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 74.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 72.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 71.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 70.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 69.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 69.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 67.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 67.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 63.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 62.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 62.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 61.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 60.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 55.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 55.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 50.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 50.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 45.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

123.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 123.1
FF:10151-102I7 76 years, female 123.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
Pig sample Sample description nTPM
Amygdala
nTPM: 99.0
Samples: 4

Max nTPM: 141.2
Min nTPM: 75.3
Sample A Female 141.2
Sample B Female 103.0
Sample C Male 75.3
Sample D Male 76.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.3
Samples: 4

Max nTPM: 107.6
Min nTPM: 105.5
Sample A Male 106.2
Sample B Male 105.5
Sample C Female 107.6
Sample D Female 106.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
70743842 Antisense, RP_050725_01_G04, Mouse strain C57BL/6J (56 days, male) 7.7
633302 Antisense, RP_040907_02_F10, Mouse strain C57BL/6J (56 days, male) 1.7

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