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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:366.3 nTPM
HPA Brain:306.8 nTPM
GTEx:366.3 nTPM
FANTOM5:359.8 Scaled Tags Per Million
Pig:199.8 nTPM
Mouse:400.2 nTPM
Allen mouse:13.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.8
Sample id Sample description nTPM
Amygdala
nTPM: 281.0
2814 Male, age 76, right hemisphere 408.4
1987 Female, age 91, left hemisphere 283.3
2517 Female, age 94, left hemisphere 267.7
2695 Female, age 67, right hemisphere 237.6
2514 Male, age 75, right hemisphere 208.0
Basal amygdala
nTPM: 306.8
2243 Female, age 91, right hemisphere 381.4
1955 Male, age 76, both hemispheres 333.3
2609 Male, age 75, right hemisphere 310.7
2827 Female, age 67, right hemisphere 309.7
2685 Female, age 94, left hemisphere 280.4
2110 Male, age 80, left hemisphere 225.2
Central amygdala
nTPM: 291.7
1905 Male, age 76, both hemispheres 425.4
2826 Female, age 94, left hemisphere 308.0
2239 Male, age 80, left hemisphere 285.4
2515 Male, age 75, right hemisphere 281.9
2701 Female, age 91, right hemisphere 157.6
Corticomedial amygdala
nTPM: 306.3
2242 Female, age 91, right hemisphere 369.2
2829 Male, age 80, left hemisphere 340.8
2535 Female, age 67, right hemisphere 324.4
2428 Male, age 75, right hemisphere 288.1
2240 Male, age 76, both hemispheres 262.9
2429 Female, age 94, left hemisphere 252.6
Lateral amygdala
nTPM: 282.4
1883 Male, age 76, both hemispheres 386.1
2534 Female, age 94, left hemisphere 309.0
2830 Female, age 67, right hemisphere 284.0
2255 Female, age 91, right hemisphere 246.8
2256 Male, age 80, left hemisphere 241.3
2516 Male, age 75, right hemisphere 227.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 366.3
Samples: 181

Max nTPM: 1084.3
Min nTPM: 109.0
Std nTPM: 129.4
Median nTPM: 350.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1084.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 720.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 605.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 604.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 603.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 585.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 569.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 565.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 564.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 563.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 549.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 549.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 546.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 545.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 536.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 534.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 524.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 522.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 522.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 521.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 521.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 520.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 520.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 518.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 518.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 518.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 509.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 509.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 504.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 501.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 497.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 494.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 493.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 492.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 492.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 478.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 478.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 476.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 472.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 467.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 466.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 460.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 454.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 453.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 452.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 451.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 447.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 445.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 445.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 443.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 443.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 441.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 436.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 435.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 435.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 430.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 429.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 425.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 422.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 421.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 421.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 420.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 416.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 414.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 412.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 410.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 406.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 402.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 398.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 395.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 395.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 393.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 392.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 389.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 388.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 376.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 375.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 373.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 372.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 372.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 370.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 363.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 363.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 362.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 362.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 361.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 360.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 357.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 351.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 351.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 350.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 350.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 348.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 344.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 343.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 341.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 340.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 340.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 339.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 338.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 336.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 335.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 332.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 329.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 324.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 324.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 324.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 322.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 318.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 317.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 317.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 313.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 309.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 304.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 303.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 300.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 299.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 299.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 299.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 297.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 296.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 294.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 294.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 291.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 291.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 285.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 284.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 282.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 281.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 279.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 278.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 277.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 276.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 275.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 270.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 268.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 266.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 264.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 263.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 262.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 257.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 256.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 255.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 255.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 250.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 247.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 239.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 236.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 234.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 234.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 234.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 233.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 233.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 233.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 233.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 231.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 231.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 223.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 221.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 219.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 218.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 217.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 214.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 211.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 207.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 205.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 192.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 191.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 187.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 179.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 179.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 177.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 176.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 174.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 152.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 147.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 139.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 359.8
FF:10151-102I7 76 years, female 359.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.8
Pig sample Sample description nTPM
Amygdala
nTPM: 199.8
Samples: 4

Max nTPM: 262.5
Min nTPM: 105.3
Sample A Female 262.5
Sample B Female 105.3
Sample C Male 226.3
Sample D Male 205.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.2
Samples: 4

Max nTPM: 436.6
Min nTPM: 335.1
Sample A Male 335.1
Sample B Male 421.4
Sample C Female 436.6
Sample D Female 407.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.3
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 13.3

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