MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA Brain:43.8 nTPM
GTEx:27.7 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:22.5 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
2586 Male, age 75, left hemisphere 42.0
1830 Male, age 51, unknown 40.7
1870 Female, age 42, unknown 40.6
2411 Female, age 72, unknown 40.5
2019 Male, age 18, unknown 39.1
2828 Female, age 72, unknown 38.2
1833 Male, age 53, unknown 37.5
2219 Male, age 76, both hemispheres 35.6
2666 Male, age 74, left hemisphere 28.6
1827 Male, age 72, unknown 28.4
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 42.1
2016 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 28.0
2047 Male, age 72, unknown 23.2
2298 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 26.4
2849 Male, age 72, unknown 31.3
1848 Female, age 42, unknown 28.1
1890 Male, age 53, unknown 25.7
2097 Female, age 72, unknown 20.3
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Periaquaductal grey, anterior
nTPM: 29.0
2502 Female, age 75, unknown 36.0
1795 Male, age 51, unknown 25.5
1947 Male, age 18, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 24.2
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 25.9
1831 Male, age 72, unknown 22.9
1840 Male, age 53, unknown 21.2
Periaquaductal grey, lateral
nTPM: 29.5
2140 Male, age 76, both hemispheres 35.4
2053 Male, age 18, unknown 27.9
2272 Male, age 74, both hemispheres 25.3
Pretectal area
nTPM: 26.4
2667 Female, age 75, unknown 33.2
2316 Male, age 76, right hemisphere 31.6
1815 Male, age 53, unknown 31.3
2407 Male, age 75, both hemispheres 29.4
2825 Male, age 18, unknown 29.0
2273 Male, age 74, both hemispheres 27.3
2007 Male, age 72, unknown 24.6
1817 Female, age 42, unknown 23.6
2224 Female, age 72, unknown 22.8
1816 Male, age 51, unknown 19.7
1944 Female, age 72, unknown 17.3
Red nucleus
nTPM: 43.8
2769 Male, age 72, unknown 54.5
2227 Male, age 72, unknown 53.2
1865 Male, age 51, unknown 49.7
1904 Male, age 53, unknown 49.7
2823 Male, age 76, right hemisphere 44.6
2503 Female, age 72, unknown 43.2
2588 Male, age 74, left hemisphere 42.8
1821 Female, age 72, unknown 40.4
2584 Male, age 75, left hemisphere 39.7
1954 Female, age 42, unknown 39.1
2785 Male, age 18, unknown 37.8
2725 Female, age 75, unknown 30.6
Substantia nigra
nTPM: 25.9
2583 Male, age 75, right hemisphere 33.7
2699 Male, age 18, unknown 33.7
1851 Male, age 51, unknown 31.1
1889 Female, age 72, unknown 27.8
2409 Female, age 72, unknown 24.2
2590 Female, age 75, unknown 24.1
1916 Female, age 42, unknown 23.2
1941 Male, age 53, unknown 22.2
2665 Male, age 74, both hemispheres 20.8
2241 Male, age 72, unknown 18.5
Superior colliculus
nTPM: 30.5
1913 Female, age 42, unknown 44.4
1995 Male, age 72, unknown 37.8
2664 Male, age 75, both hemispheres 32.6
1839 Male, age 51, unknown 31.8
2587 Male, age 74, left hemisphere 29.4
2668 Female, age 75, unknown 27.6
1895 Male, age 76, right hemisphere 27.4
1796 Male, age 53, unknown 27.3
2261 Male, age 18, unknown 25.5
2087 Female, age 72, unknown 20.7
Ventral tegmental area
nTPM: 30.0
2223 Female, age 72, unknown 44.2
2021 Male, age 53, unknown 30.0
2410 Female, age 72, unknown 29.1
2218 Male, age 76, both hemispheres 26.9
1942 Male, age 51, unknown 26.1
1915 Female, age 42, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.7
Samples: 183

Max nTPM: 77.9
Min nTPM: 8.3
Std nTPM: 10.4
Median nTPM: 26.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 77.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 60.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 51.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 47.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 46.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 46.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 46.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 26.0
Min nTPM: 15.2
Sample A Female 19.6
Sample B Female 15.6
Sample C Male 15.2
Sample D Male 26.0
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 42.2
Min nTPM: 11.5
Sample A Female 42.2
Sample B Female 16.9
Sample C Male 11.7
Sample D Male 11.5
Periaqueductal gray
nTPM: 15.7
Samples: 3

Max nTPM: 16.1
Min nTPM: 15.1
Sample B Female 16.1
Sample C Male 16.0
Sample D Male 15.1
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 18.9
Min nTPM: 15.3
Sample A Female 17.9
Sample B Female 15.6
Sample C Male 15.3
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.9
Sample A Male 26.6
Sample B Male 21.8
Sample C Female 19.9
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
513493 Antisense, RP_040810_02_A03, Mouse strain C57BL/6J (56 days, male) 0.8

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