BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:0.9 nTPM
GTEx:0.3 nTPM
FANTOM5:0.2 Scaled Tags Per Million
Mouse:1.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039475
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.8
2481 Female, age 94, left hemisphere 1.1
2290 Female, age 72, unknown 0.9
2846 Female, age 79, unknown 0.9
2289 Male, age 61, right hemisphere 0.8
1781 Male, age 74, unknown 0.7
1854 Male, age 80, left hemisphere 0.6
1857 Female, age 85, left hemisphere 0.6
2288 Male, age 75, left hemisphere 0.6
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 1.1
2395 Male, age 75, both hemispheres 0.8
1996 Male, age 80, right hemisphere 0.7
2567 Female, age 72, unknown 0.7
2772 Female, age 79, unknown 0.7
Globus pallidus, internus
nTPM: 0.9
2778 Female, age 91, both hemispheres 1.5
2287 Male, age 75, right hemisphere 0.9
2566 Female, age 72, unknown 0.9
2111 Female, age 85, right hemisphere 0.8
2483 Female, age 94, right hemisphere 0.8
1818 Male, age 74, unknown 0.7
2037 Male, age 80, right hemisphere 0.6
Nucleus accumbens
nTPM: 0.5
1806 Female, age 85, left hemisphere 0.7
1783 Male, age 74, unknown 0.6
2286 Male, age 75, left hemisphere 0.6
2698 Female, age 72, unknown 0.6
2732 Male, age 80, right hemisphere 0.6
1856 Female, age 91, right hemisphere 0.4
2391 Female, age 94, left hemisphere 0.3
2824 Male, age 61, right hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 0.9
2569 Male, age 61, both hemispheres 1.7
2393 Male, age 80, right hemisphere 0.7
2821 Male, age 75, both hemispheres 0.7
2484 Female, age 94, left hemisphere 0.5
Nucleus of the diagonal band
nTPM: 0.4
1812 Female, age 91, both hemispheres 0.5
2029 Male, age 61, right hemisphere 0.4
1979 Male, age 74, unknown 0.3
2195 Female, age 85, both hemispheres 0.3
2775 Male, age 80, right hemisphere 0.3
Putamen
nTPM: 0.6
2489 Female, age 72, unknown 0.9
1829 Male, age 74, unknown 0.6
1937 Female, age 91, right hemisphere 0.6
2466 Female, age 79, unknown 0.6
2647 Male, age 75, left hemisphere 0.6
1838 Male, age 80, right hemisphere 0.5
2482 Female, age 94, left hemisphere 0.5
Septal nuclei
nTPM: 0.3
2031 Female, age 72, unknown 0.5
2199 Male, age 80, right hemisphere 0.5
2009 Female, age 91, both hemispheres 0.4
2394 Male, age 61, left hemisphere 0.3
1960 Male, age 74, unknown 0.2
2059 Female, age 85, both hemispheres 0.2
2629 Female, age 94, right hemisphere 0.2
Stria terminalis, bed nucleus
nTPM: 0.3
2201 Male, age 74, unknown 0.4
1974 Female, age 91, both hemispheres 0.3
2486 Female, age 94, both hemispheres 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 0.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 0.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 0.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 0.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 0.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 0.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 0.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 0.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.7
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 0.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 0.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 0.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 0.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 0.5
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 0.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 0.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 0.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 0.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 0.5
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 0.8
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 0.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 0.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 0.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 0.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 0.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 0.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 0.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 0.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 0.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 0.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.6
Sample A Male 1.9
Sample B Male 1.9
Sample C Female 0.9
Sample D Female 0.6
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.1
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 1.2
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
76081028 Antisense, RP_060608_03_D03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
76081028 Antisense, RP_060608_03_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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