MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:21.9 nTPM
GTEx:17.7 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:3.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
1830 Male, age 51, unknown 15.3
1833 Male, age 53, unknown 15.0
2219 Male, age 76, both hemispheres 11.5
2666 Male, age 74, left hemisphere 11.3
2411 Female, age 72, unknown 11.0
1870 Female, age 42, unknown 10.9
1827 Male, age 72, unknown 10.2
2828 Female, age 72, unknown 8.3
2586 Male, age 75, left hemisphere 7.3
2019 Male, age 18, unknown 5.9
Dorsal raphe nucleus
nTPM: 14.4
2047 Male, age 72, unknown 15.1
2750 Male, age 76, both hemispheres 15.1
1828 Male, age 53, unknown 14.3
2298 Female, age 72, unknown 14.2
2016 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 14.3
2849 Male, age 72, unknown 17.4
1848 Female, age 42, unknown 15.5
2097 Female, age 72, unknown 12.7
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 21.9
2220 Male, age 76, midline 21.9
Periaquaductal grey, anterior
nTPM: 15.3
1947 Male, age 18, unknown 17.4
2502 Female, age 75, unknown 15.0
1795 Male, age 51, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 13.1
2850 Male, age 76, both hemispheres 15.9
1840 Male, age 53, unknown 14.0
2464 Female, age 72, unknown 11.8
1831 Male, age 72, unknown 10.7
Periaquaductal grey, lateral
nTPM: 12.9
2140 Male, age 76, both hemispheres 17.0
2053 Male, age 18, unknown 11.2
2272 Male, age 74, both hemispheres 10.5
Pretectal area
nTPM: 10.6
2825 Male, age 18, unknown 18.8
2224 Female, age 72, unknown 15.8
2316 Male, age 76, right hemisphere 14.4
2407 Male, age 75, both hemispheres 13.3
2667 Female, age 75, unknown 10.6
2273 Male, age 74, both hemispheres 10.5
1944 Female, age 72, unknown 9.7
1815 Male, age 53, unknown 7.3
1816 Male, age 51, unknown 5.8
2007 Male, age 72, unknown 5.5
1817 Female, age 42, unknown 4.9
Red nucleus
nTPM: 9.5
2584 Male, age 75, left hemisphere 12.6
2769 Male, age 72, unknown 11.3
2227 Male, age 72, unknown 10.3
1821 Female, age 72, unknown 9.9
2503 Female, age 72, unknown 9.8
2823 Male, age 76, right hemisphere 9.7
1865 Male, age 51, unknown 9.4
1904 Male, age 53, unknown 8.9
2725 Female, age 75, unknown 8.7
2588 Male, age 74, left hemisphere 8.4
1954 Female, age 42, unknown 8.0
2785 Male, age 18, unknown 6.8
Substantia nigra
nTPM: 13.4
2241 Male, age 72, unknown 17.6
1916 Female, age 42, unknown 16.2
2409 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 14.4
1851 Male, age 51, unknown 13.9
2590 Female, age 75, unknown 13.4
1941 Male, age 53, unknown 13.3
2583 Male, age 75, right hemisphere 12.1
2665 Male, age 74, both hemispheres 11.4
1889 Female, age 72, unknown 7.6
Superior colliculus
nTPM: 9.7
1839 Male, age 51, unknown 12.7
1796 Male, age 53, unknown 11.7
2587 Male, age 74, left hemisphere 10.7
2261 Male, age 18, unknown 10.4
1895 Male, age 76, right hemisphere 9.9
2668 Female, age 75, unknown 9.5
1995 Male, age 72, unknown 8.9
2087 Female, age 72, unknown 8.9
2664 Male, age 75, both hemispheres 7.9
1913 Female, age 42, unknown 6.7
Ventral tegmental area
nTPM: 10.7
1915 Female, age 42, unknown 12.9
2223 Female, age 72, unknown 11.3
2218 Male, age 76, both hemispheres 11.0
2410 Female, age 72, unknown 10.4
1942 Male, age 51, unknown 9.7
2021 Male, age 53, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.7
Samples: 139

Max nTPM: 42.5
Min nTPM: 4.1
Std nTPM: 6.7
Median nTPM: 16.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 42.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 39.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 38.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 33.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 33.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 32.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 32.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 30.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 27.5
Min nTPM: 9.0
Sample A Female 27.5
Sample B Female 16.6
Sample C Male 17.8
Sample D Male 9.0
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 16.8
Sample C Male 13.3
Sample D Male 12.9
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 23.1
Min nTPM: 12.4
Sample B Female 12.4
Sample C Male 23.1
Sample D Male 15.3
Superior colliculi
nTPM: 16.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 5.8
Sample A Female 16.7
Sample B Female 31.4
Sample C Male 5.8
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.3
Sample A Male 4.0
Sample B Male 4.0
Sample C Female 3.3
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
71654134 Antisense, RP_050927_03_D08, Mouse strain C57BL/6J (56 days, male) 2.5

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