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  • HTRA1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:324.3 nTPM
HPA Brain:232.4 nTPM
GTEx:324.3 nTPM
FANTOM5:189.8 Scaled Tags Per Million
Pig:282.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 216.9
1981 Female, age 72, midline 263.3
2048 Male, age 55, midline 224.4
2194 Female, age 79, both hemispheres 211.9
2565 Male, age 75, midline 211.4
2816 Male, age 47, midline 173.7
Cervical spinal cord, dorsal horn
nTPM: 231.9
2173 Female, age 72, unknown 364.5
2069 Male, age 47, both hemispheres 249.0
2296 Male, age 66, both hemispheres 244.5
1877 Male, age 55, unknown 203.3
2297 Male, age 75, both hemispheres 174.5
2721 Male, age 90, both hemispheres 155.7
Cervical spinal cord, ventral horn
nTPM: 232.4
2295 Male, age 66, both hemispheres 261.7
2098 Female, age 72, unknown 240.5
2480 Male, age 75, both hemispheres 234.3
2068 Male, age 55, unknown 223.5
2820 Female, age 79, both hemispheres 221.4
2809 Male, age 90, both hemispheres 213.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 324.3
Samples: 204

Max nTPM: 601.3
Min nTPM: 112.4
Std nTPM: 95.5
Median nTPM: 309.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 601.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 598.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 558.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 555.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 554.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 550.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 544.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 538.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 526.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 520.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 516.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 508.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 500.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 495.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 488.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 488.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 479.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 472.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 468.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 468.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 461.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 457.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 456.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 452.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 452.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 439.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 437.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 437.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 435.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 431.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 428.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 419.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 418.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 416.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 415.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 414.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 414.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 412.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 410.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 406.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 401.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 399.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 396.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 391.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 389.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 388.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 387.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 386.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 379.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 378.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 377.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 377.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 371.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 371.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 370.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 367.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 367.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 365.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 363.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 363.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 358.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 354.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 351.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 349.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 349.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 348.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 348.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 348.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 348.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 347.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 347.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 345.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 345.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 343.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 343.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 342.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 341.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 340.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 340.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 338.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 338.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 337.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 337.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 335.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 335.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 334.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 333.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 333.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 331.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 330.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 329.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 326.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 326.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 326.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 324.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 323.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 323.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 321.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 317.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 315.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 311.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 309.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 308.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 306.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 306.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 304.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 302.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 301.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 301.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 299.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 299.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 298.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 297.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 295.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 295.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 294.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 294.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 291.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 289.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 289.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 288.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 288.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 287.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 284.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 283.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 282.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 281.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 280.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 280.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 279.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 277.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 277.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 276.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 273.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 272.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 271.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 271.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 270.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 270.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 270.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 268.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 267.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 265.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 264.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 264.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 262.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 259.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 259.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 258.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 258.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 256.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 254.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 253.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 253.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 253.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 253.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 252.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 252.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 251.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 246.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 244.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 242.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 241.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 240.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 238.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 238.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 237.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 236.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 235.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 235.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 233.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 233.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 231.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 229.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 228.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 224.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 224.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 224.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 224.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 222.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 221.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 218.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 218.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 215.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 211.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 210.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 209.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 208.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 208.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 207.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 205.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 198.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 195.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 195.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 193.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 187.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 181.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 180.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 177.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 171.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 168.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 163.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 156.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 112.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

189.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 189.8
FF:10181-103D1 60 years, female 216.1
FF:10159-103A6 76 years, female 163.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 191.6
Samples: 4

Max nTPM: 209.1
Min nTPM: 177.6
Sample A Female 184.5
Sample B Female 177.6
Sample C Male 195.1
Sample D Male 209.1
Ventral spinal cord
nTPM: 282.7
Samples: 4

Max nTPM: 290.5
Min nTPM: 265.9
Sample A Female 288.5
Sample B Female 290.5
Sample C Male 285.8
Sample D Male 265.9

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