MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA Brain:31.5 nTPM
GTEx:39.4 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:49.2 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.7
1827 Male, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 25.4
2019 Male, age 18, unknown 25.2
2411 Female, age 72, unknown 24.6
2219 Male, age 76, both hemispheres 22.4
1870 Female, age 42, unknown 19.7
1833 Male, age 53, unknown 19.4
2666 Male, age 74, left hemisphere 18.7
2828 Female, age 72, unknown 18.2
1830 Male, age 51, unknown 17.8
Dorsal raphe nucleus
nTPM: 27.8
2298 Female, age 72, unknown 33.8
2016 Female, age 72, unknown 29.0
1828 Male, age 53, unknown 28.4
2047 Male, age 72, unknown 26.6
2750 Male, age 76, both hemispheres 20.9
Inferior colliculus
nTPM: 21.6
2849 Male, age 72, unknown 22.9
2097 Female, age 72, unknown 22.1
1890 Male, age 53, unknown 21.7
1848 Female, age 42, unknown 19.6
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Periaquaductal grey, anterior
nTPM: 23.3
1795 Male, age 51, unknown 25.6
2502 Female, age 75, unknown 23.5
1947 Male, age 18, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 24.8
2850 Male, age 76, both hemispheres 31.1
1840 Male, age 53, unknown 27.4
2464 Female, age 72, unknown 20.8
1831 Male, age 72, unknown 19.7
Periaquaductal grey, lateral
nTPM: 28.4
2272 Male, age 74, both hemispheres 36.7
2140 Male, age 76, both hemispheres 29.5
2053 Male, age 18, unknown 18.9
Pretectal area
nTPM: 24.6
2273 Male, age 74, both hemispheres 33.1
1944 Female, age 72, unknown 28.8
2007 Male, age 72, unknown 26.9
1816 Male, age 51, unknown 26.0
1817 Female, age 42, unknown 25.1
2224 Female, age 72, unknown 24.4
2825 Male, age 18, unknown 23.1
1815 Male, age 53, unknown 22.6
2407 Male, age 75, both hemispheres 22.4
2667 Female, age 75, unknown 22.1
2316 Male, age 76, right hemisphere 16.1
Red nucleus
nTPM: 18.4
2725 Female, age 75, unknown 21.0
2785 Male, age 18, unknown 20.3
1821 Female, age 72, unknown 20.1
2769 Male, age 72, unknown 19.5
2227 Male, age 72, unknown 19.0
1904 Male, age 53, unknown 18.9
2584 Male, age 75, left hemisphere 18.6
2588 Male, age 74, left hemisphere 18.6
1865 Male, age 51, unknown 17.7
2503 Female, age 72, unknown 16.1
1954 Female, age 42, unknown 15.8
2823 Male, age 76, right hemisphere 15.4
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 45.7
1851 Male, age 51, unknown 37.0
1941 Male, age 53, unknown 31.5
2699 Male, age 18, unknown 30.8
2665 Male, age 74, both hemispheres 30.7
2241 Male, age 72, unknown 30.5
2409 Female, age 72, unknown 27.4
1889 Female, age 72, unknown 26.5
2590 Female, age 75, unknown 24.1
2583 Male, age 75, right hemisphere 21.7
Superior colliculus
nTPM: 22.9
2261 Male, age 18, unknown 28.6
2668 Female, age 75, unknown 26.7
2664 Male, age 75, both hemispheres 24.9
1796 Male, age 53, unknown 24.3
2087 Female, age 72, unknown 23.9
2587 Male, age 74, left hemisphere 22.9
1839 Male, age 51, unknown 21.8
1895 Male, age 76, right hemisphere 20.3
1995 Male, age 72, unknown 17.7
1913 Female, age 42, unknown 17.5
Ventral tegmental area
nTPM: 26.3
1915 Female, age 42, unknown 31.2
2410 Female, age 72, unknown 29.6
2218 Male, age 76, both hemispheres 28.2
1942 Male, age 51, unknown 23.2
2021 Male, age 53, unknown 22.7
2223 Female, age 72, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.4
Samples: 183

Max nTPM: 104.0
Min nTPM: 15.6
Std nTPM: 16.1
Median nTPM: 36.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 104.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 94.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 92.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 74.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 74.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 72.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 72.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 71.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.8
Samples: 4

Max nTPM: 58.6
Min nTPM: 35.3
Sample A Female 58.6
Sample B Female 38.8
Sample C Male 54.3
Sample D Male 35.3
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 70.7
Min nTPM: 41.0
Sample A Female 41.0
Sample B Female 51.3
Sample C Male 70.7
Sample D Male 53.5
Periaqueductal gray
nTPM: 50.0
Samples: 3

Max nTPM: 59.9
Min nTPM: 45.0
Sample B Female 45.0
Sample C Male 59.9
Sample D Male 45.2
Superior colliculi
nTPM: 65.6
Samples: 4

Max nTPM: 80.7
Min nTPM: 52.7
Sample A Female 68.7
Sample B Female 60.1
Sample C Male 80.7
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 50.6
Min nTPM: 47.9
Sample A Male 48.4
Sample B Male 49.9
Sample C Female 47.9
Sample D Female 50.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
68545527 Antisense, RP_050120_01_B01, Mouse strain C57BL/6J (56 days, male) 4.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo