HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:83.2 nTPM
HPA Brain:68.4 nTPM
GTEx:83.2 nTPM
FANTOM5:111.7 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:24.5 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020338
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.4
Sample id Sample description nTPM
Hippocampus
nTPM: 54.1
1898 Male, age 80, left hemisphere 59.9
2621 Female, age 67, right hemisphere 58.8
1911 Female, age 85, right hemisphere 55.9
1855 Male, age 76, left hemisphere 53.1
2529 Female, age 94, left hemisphere 50.2
2148 Female, age 91, left hemisphere 46.9
Dentate gyrus
nTPM: 58.1
2530 Female, age 94, left hemisphere 78.0
2010 Male, age 76, both hemispheres 75.6
2246 Female, age 85, both hemispheres 55.1
2531 Female, age 67, both hemispheres 47.3
1927 Female, age 91, both hemispheres 46.9
2528 Male, age 74, both hemispheres 45.7
Entorhinal gyrus
nTPM: 57.0
2117 Female, age 91, right hemisphere 76.9
2764 Male, age 80, right hemisphere 64.4
2613 Female, age 94, left hemisphere 52.9
1787 Male, age 76, left hemisphere 51.8
1938 Female, age 85, left hemisphere 49.5
2686 Male, age 75, right hemisphere 46.5
Hippocampus, CA1
nTPM: 57.1
2749 Male, age 80, left hemisphere 70.0
1873 Female, age 85, both hemispheres 57.7
2527 Male, age 74, both hemispheres 55.5
2045 Male, age 76, both hemispheres 54.1
2082 Female, age 91, right hemisphere 48.2
Hippocampus, CA2
nTPM: 58.4
1963 Male, age 80, left hemisphere 73.2
2249 Male, age 74, both hemispheres 61.0
1892 Male, age 76, both hemispheres 59.3
1940 Female, age 85, left hemisphere 56.1
2437 Female, age 94, left hemisphere 53.1
2113 Female, age 91, right hemisphere 47.7
Hippocampus, CA3
nTPM: 47.9
1891 Female, age 85, both hemispheres 67.6
1867 Male, age 76, both hemispheres 57.5
2620 Female, age 94, left hemisphere 48.9
2137 Male, age 80, left hemisphere 44.1
2436 Male, age 74, both hemispheres 40.4
2861 Female, age 67, both hemispheres 28.8
Parahippocampal cortex
nTPM: 52.0
2532 Female, age 72, left hemisphere 70.5
1850 Male, age 80, both hemispheres 62.4
2692 Male, age 74, both hemispheres 62.3
1990 Female, age 91, right hemisphere 59.2
2018 Male, age 76, both hemispheres 59.0
2245 Female, age 91, both hemispheres 50.9
1933 Female, age 85, both hemispheres 48.8
2693 Female, age 94, both hemispheres 45.2
2250 Female, age 67, right hemisphere 31.2
2622 Female, age 67, right hemisphere 30.2
Perirhinal gyrus
nTPM: 52.9
1794 Male, age 80, right hemisphere 61.1
2521 Female, age 94, right hemisphere 58.9
1847 Female, age 91, left hemisphere 49.8
2848 Male, age 76, right hemisphere 48.6
1841 Female, age 85, right hemisphere 45.8
Subiculum
nTPM: 68.4
2438 Female, age 94, left hemisphere 90.8
2042 Male, age 76, both hemispheres 85.8
1901 Male, age 80, both hemispheres 72.2
1977 Female, age 85, both hemispheres 68.4
2619 Male, age 74, both hemispheres 55.1
2729 Female, age 91, right hemisphere 38.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 83.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 83.2
Samples: 255

Max nTPM: 629.3
Min nTPM: 20.5
Std nTPM: 59.1
Median nTPM: 70.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 629.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 482.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 287.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 258.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 254.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 227.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 227.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 212.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 208.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 181.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 166.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 111.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 111.7
FF:10169-103B7 60 years, female 112.1
FF:10153-102I9 76 years, female 111.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 43.1
Pig sample Sample description nTPM
Subiculum
nTPM: 22.5
Samples: 4

Max nTPM: 28.4
Min nTPM: 18.4
Sample A Female 28.4
Sample B Female 23.9
Sample C Male 18.4
Sample D Male 19.4
Dorsal hippocampus
nTPM: 43.1
Samples: 4

Max nTPM: 61.2
Min nTPM: 27.4
Sample A Female 61.2
Sample B Female 39.2
Sample C Male 44.7
Sample D Male 27.4
Entorhinal cortex
nTPM: 26.6
Samples: 4

Max nTPM: 29.6
Min nTPM: 23.6
Sample A Female 27.8
Sample B Female 29.6
Sample C Male 23.6
Sample D Male 25.4
Ventral hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 44.5
Min nTPM: 18.6
Sample A Female 28.5
Sample B Female 18.6
Sample C Male 25.5
Sample D Male 44.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 24.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.2
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.3
Sample A Male 24.2
Sample B Male 20.9
Sample C Female 19.3
Sample D Female 20.2
Hippocampal formation
nTPM: 24.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 22.0
Sample A Male 22.0
Sample B Male 25.5
Sample C Female 27.1
Sample D Female 23.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
69443427 Antisense, RP_050414_04_A11, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo