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  • CCT2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:48.5 nTPM
HPA Brain:41.0 nTPM
GTEx:48.5 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:146.7 nTPM
Allen mouse:19.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.0
Sample id Sample description nTPM
Amygdala
nTPM: 41.0
1987 Female, age 91, left hemisphere 44.9
2814 Male, age 76, right hemisphere 44.2
2514 Male, age 75, right hemisphere 43.0
2695 Female, age 67, right hemisphere 38.0
2517 Female, age 94, left hemisphere 35.2
Basal amygdala
nTPM: 32.0
2609 Male, age 75, right hemisphere 40.6
2110 Male, age 80, left hemisphere 36.3
1955 Male, age 76, both hemispheres 31.3
2243 Female, age 91, right hemisphere 31.2
2685 Female, age 94, left hemisphere 29.2
2827 Female, age 67, right hemisphere 23.7
Central amygdala
nTPM: 36.2
2515 Male, age 75, right hemisphere 43.2
1905 Male, age 76, both hemispheres 38.6
2826 Female, age 94, left hemisphere 36.0
2239 Male, age 80, left hemisphere 31.6
2701 Female, age 91, right hemisphere 31.4
Corticomedial amygdala
nTPM: 35.6
2428 Male, age 75, right hemisphere 46.8
2829 Male, age 80, left hemisphere 42.0
2242 Female, age 91, right hemisphere 36.6
2429 Female, age 94, left hemisphere 34.0
2240 Male, age 76, both hemispheres 30.8
2535 Female, age 67, right hemisphere 23.5
Lateral amygdala
nTPM: 32.3
1883 Male, age 76, both hemispheres 42.6
2516 Male, age 75, right hemisphere 40.6
2534 Female, age 94, left hemisphere 31.3
2256 Male, age 80, left hemisphere 26.9
2255 Female, age 91, right hemisphere 26.7
2830 Female, age 67, right hemisphere 25.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 48.5
Samples: 181

Max nTPM: 84.0
Min nTPM: 23.2
Std nTPM: 10.2
Median nTPM: 47.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 84.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 76.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 73.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 72.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 72.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 71.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 70.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 69.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 66.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 66.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 65.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 63.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 62.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 61.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 61.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 61.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 60.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 60.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 59.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 59.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 58.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 58.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 57.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 56.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 56.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 56.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 55.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 55.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 55.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 55.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 54.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 54.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 54.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 53.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 53.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 52.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 52.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 52.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 52.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 52.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 52.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 51.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 51.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 51.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 50.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 50.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 50.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 50.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 50.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 50.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 50.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 50.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 49.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 49.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 49.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 49.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 49.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 49.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 48.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 48.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 48.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 47.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 47.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 47.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 47.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 47.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 47.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 47.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 46.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 46.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 46.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 46.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 46.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 45.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 45.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 45.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 45.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 45.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 45.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 44.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 44.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 44.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 44.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 44.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 44.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 44.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 43.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 43.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 43.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 43.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 43.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 43.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 43.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 43.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 43.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 43.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 42.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 42.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 42.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 42.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 42.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 42.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 42.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 41.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 41.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 40.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 40.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 40.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 40.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 40.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 40.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 39.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 39.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 39.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 39.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 38.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 38.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 38.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 37.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 37.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 35.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 34.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 34.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 34.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 33.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 33.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 33.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 31.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 30.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 29.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 27.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 23.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.9
FF:10151-102I7 76 years, female 61.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.8
Pig sample Sample description nTPM
Amygdala
nTPM: 80.8
Samples: 4

Max nTPM: 102.3
Min nTPM: 67.5
Sample A Female 102.3
Sample B Female 81.0
Sample C Male 67.5
Sample D Male 72.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 146.7
Samples: 4

Max nTPM: 155.0
Min nTPM: 137.1
Sample A Male 155.0
Sample B Male 146.6
Sample C Female 137.1
Sample D Female 148.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.4
356082 Antisense, RP_040617_01_G03, Mouse strain C57BL/6J (56 days, male) 19.4
293916 Antisense, RP_040617_01_G03, Mouse strain C57BL/6J (56 days, male) 17.5

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