HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:66.5 nTPM
GTEx:10.7 nTPM
FANTOM5:69.5 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:44.4 nTPM
Allen mouse:11.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 66.5
Sample id Sample description nTPM
Hippocampus
nTPM: 53.9
1855 Male, age 76, left hemisphere 79.6
1898 Male, age 80, left hemisphere 71.2
2148 Female, age 91, left hemisphere 61.7
2621 Female, age 67, right hemisphere 56.6
1911 Female, age 85, right hemisphere 29.8
2529 Female, age 94, left hemisphere 24.5
Dentate gyrus
nTPM: 59.9
1927 Female, age 91, both hemispheres 96.0
2010 Male, age 76, both hemispheres 87.8
2531 Female, age 67, both hemispheres 49.2
2530 Female, age 94, left hemisphere 48.6
2246 Female, age 85, both hemispheres 42.2
2528 Male, age 74, both hemispheres 35.8
Entorhinal gyrus
nTPM: 34.5
1787 Male, age 76, left hemisphere 41.6
2686 Male, age 75, right hemisphere 37.9
2613 Female, age 94, left hemisphere 36.5
2764 Male, age 80, right hemisphere 36.5
1938 Female, age 85, left hemisphere 35.6
2117 Female, age 91, right hemisphere 19.0
Hippocampus, CA1
nTPM: 55.6
2749 Male, age 80, left hemisphere 73.9
1873 Female, age 85, both hemispheres 73.4
2045 Male, age 76, both hemispheres 69.7
2527 Male, age 74, both hemispheres 30.9
2082 Female, age 91, right hemisphere 29.9
Hippocampus, CA2
nTPM: 48.6
1892 Male, age 76, both hemispheres 101.3
1963 Male, age 80, left hemisphere 84.6
2113 Female, age 91, right hemisphere 31.8
2437 Female, age 94, left hemisphere 30.6
2249 Male, age 74, both hemispheres 24.5
1940 Female, age 85, left hemisphere 19.1
Hippocampus, CA3
nTPM: 56.3
1867 Male, age 76, both hemispheres 78.1
2137 Male, age 80, left hemisphere 76.9
2861 Female, age 67, both hemispheres 66.2
2620 Female, age 94, left hemisphere 57.0
2436 Male, age 74, both hemispheres 30.8
1891 Female, age 85, both hemispheres 29.0
Parahippocampal cortex
nTPM: 48.0
2250 Female, age 67, right hemisphere 57.2
2532 Female, age 72, left hemisphere 56.8
2622 Female, age 67, right hemisphere 54.9
1850 Male, age 80, both hemispheres 54.0
2245 Female, age 91, both hemispheres 51.9
2018 Male, age 76, both hemispheres 51.8
2693 Female, age 94, both hemispheres 45.4
1933 Female, age 85, both hemispheres 43.5
1990 Female, age 91, right hemisphere 43.3
2692 Male, age 74, both hemispheres 21.7
Perirhinal gyrus
nTPM: 66.5
2521 Female, age 94, right hemisphere 88.7
1847 Female, age 91, left hemisphere 67.2
1794 Male, age 80, right hemisphere 65.7
1841 Female, age 85, right hemisphere 57.2
2848 Male, age 76, right hemisphere 53.7
Subiculum
nTPM: 32.5
1901 Male, age 80, both hemispheres 38.5
2042 Male, age 76, both hemispheres 38.0
2729 Female, age 91, right hemisphere 35.4
1977 Female, age 85, both hemispheres 34.2
2438 Female, age 94, left hemisphere 25.3
2619 Male, age 74, both hemispheres 23.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.7
Samples: 255

Max nTPM: 51.1
Min nTPM: 0.2
Std nTPM: 8.0
Median nTPM: 8.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 51.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 40.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 36.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 34.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 34.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 33.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 32.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 30.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 29.5
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 29.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 27.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.5
FF:10169-103B7 60 years, female 103.8
FF:10153-102I9 76 years, female 35.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 55.1
Pig sample Sample description nTPM
Subiculum
nTPM: 42.4
Samples: 4

Max nTPM: 52.2
Min nTPM: 38.1
Sample A Female 52.2
Sample B Female 40.9
Sample C Male 38.1
Sample D Male 38.3
Dorsal hippocampus
nTPM: 46.9
Samples: 4

Max nTPM: 60.4
Min nTPM: 21.5
Sample A Female 60.4
Sample B Female 55.6
Sample C Male 21.5
Sample D Male 49.9
Entorhinal cortex
nTPM: 37.6
Samples: 4

Max nTPM: 39.9
Min nTPM: 35.2
Sample A Female 37.8
Sample B Female 37.4
Sample C Male 39.9
Sample D Male 35.2
Ventral hippocampus
nTPM: 55.1
Samples: 4

Max nTPM: 95.9
Min nTPM: 30.9
Sample A Female 95.9
Sample B Female 38.4
Sample C Male 55.1
Sample D Male 30.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 44.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 35.5
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 24.4
Sample C Female 30.1
Sample D Female 35.5
Hippocampal formation
nTPM: 44.4
Samples: 4

Max nTPM: 52.6
Min nTPM: 37.1
Sample A Male 38.3
Sample B Male 49.6
Sample C Female 52.6
Sample D Female 37.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.4
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 14.7
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 8.1

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