BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:43.3 nTPM
GTEx:11.6 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:59.9 nTPM
Allen mouse:13.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 43.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.2
2289 Male, age 61, right hemisphere 53.7
2846 Female, age 79, unknown 52.4
2290 Female, age 72, unknown 46.0
1781 Male, age 74, unknown 40.5
1854 Male, age 80, left hemisphere 38.1
1857 Female, age 85, left hemisphere 35.7
2288 Male, age 75, left hemisphere 31.6
2481 Female, age 94, left hemisphere 23.3
Globus pallidus, externus
nTPM: 7.2
2646 Male, age 61, right hemisphere 13.7
2772 Female, age 79, unknown 8.1
2395 Male, age 75, both hemispheres 6.4
2567 Female, age 72, unknown 5.1
1996 Male, age 80, right hemisphere 2.6
Globus pallidus, internus
nTPM: 4.5
2483 Female, age 94, right hemisphere 13.0
2566 Female, age 72, unknown 6.4
2287 Male, age 75, right hemisphere 3.6
2111 Female, age 85, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.3
1818 Male, age 74, unknown 2.0
2037 Male, age 80, right hemisphere 1.7
Nucleus accumbens
nTPM: 38.7
1856 Female, age 91, right hemisphere 62.1
2824 Male, age 61, right hemisphere 61.9
1783 Male, age 74, unknown 48.3
2698 Female, age 72, unknown 39.0
1806 Female, age 85, left hemisphere 36.1
2286 Male, age 75, left hemisphere 26.0
2391 Female, age 94, left hemisphere 19.9
2732 Male, age 80, right hemisphere 16.5
Nucleus basalis of Meynert
nTPM: 29.0
2484 Female, age 94, left hemisphere 38.0
2393 Male, age 80, right hemisphere 37.4
2821 Male, age 75, both hemispheres 28.6
2569 Male, age 61, both hemispheres 11.9
Nucleus of the diagonal band
nTPM: 43.3
2029 Male, age 61, right hemisphere 56.1
1812 Female, age 91, both hemispheres 49.9
2775 Male, age 80, right hemisphere 44.6
2195 Female, age 85, both hemispheres 44.5
1979 Male, age 74, unknown 21.3
Putamen
nTPM: 41.2
2466 Female, age 79, unknown 53.7
1829 Male, age 74, unknown 53.1
1838 Male, age 80, right hemisphere 50.7
1937 Female, age 91, right hemisphere 46.4
2489 Female, age 72, unknown 38.7
2482 Female, age 94, left hemisphere 23.8
2647 Male, age 75, left hemisphere 22.2
Septal nuclei
nTPM: 37.4
2031 Female, age 72, unknown 58.3
2629 Female, age 94, right hemisphere 55.6
1960 Male, age 74, unknown 50.6
2009 Female, age 91, both hemispheres 41.8
2059 Female, age 85, both hemispheres 28.4
2394 Male, age 61, left hemisphere 19.4
2199 Male, age 80, right hemisphere 7.5
Stria terminalis, bed nucleus
nTPM: 40.7
2486 Female, age 94, both hemispheres 57.0
1974 Female, age 91, both hemispheres 45.7
2201 Male, age 74, unknown 19.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.7
Samples: 300

Max nTPM: 59.3
Min nTPM: 0.3
Std nTPM: 7.4
Median nTPM: 9.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 31.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 31.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 31.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 28.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 27.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 26.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 25.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 25.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 25.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 25.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.6
Samples: 285

Max nTPM: 27.0
Min nTPM: 0.3
Std nTPM: 5.7
Median nTPM: 11.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 27.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 26.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 24.9
GTEX-PVOW-0011-R6A-SM-H6Q8P 40-49 years, male 24.9
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 24.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 23.9
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 23.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 23.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 22.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 21.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 21.9
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Brain - Putamen (basal ganglia)
Average nTPM: 10.2
Samples: 254

Max nTPM: 35.8
Min nTPM: 0.3
Std nTPM: 6.9
Median nTPM: 9.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 35.8
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 33.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 33.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 30.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 27.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 26.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 26.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 24.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 24.3
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 24.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.8
FF:10164-103B2 76 years, female 67.8
Nucleus accumbens
Scaled Tags Per Million: 81.0
FF:10037-101F1 23-56 years, mixed 81.0
Putamen
Scaled Tags Per Million: 83.6
FF:10176-103C5 60 years, female 83.6
Globus pallidus
Scaled Tags Per Million: 24.6
FF:10175-103C4 60 years, female 40.8
FF:10161-103A8 76 years, female 8.4

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 49.9
Pig sample Sample description nTPM
Caudate
nTPM: 43.7
Samples: 4

Max nTPM: 46.8
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 43.8
Sample C Male 46.8
Sample D Male 44.7
Putamen
nTPM: 49.9
Samples: 4

Max nTPM: 77.2
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 54.8
Sample C Male 77.2
Sample D Male 49.6
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 8.9
Sample A Female 29.6
Sample B Female 28.4
Sample C Male 13.4
Sample D Male 8.9
Ventral pallidum
nTPM: 33.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 23.5
Sample A Female 38.8
Sample B Female 39.5
Sample C Male 23.5
Sample D Male 31.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 59.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.9
Samples: 4

Max nTPM: 64.0
Min nTPM: 56.1
Sample A Male 64.0
Sample B Male 61.0
Sample C Female 58.6
Sample D Female 56.1
Septum
nTPM: 17.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.8
Sample A Male 22.7
Sample B Male 15.8
Sample C Female 16.9
Sample D Female 16.1
Ventral forebrain
nTPM: 43.7
Samples: 4

Max nTPM: 47.1
Min nTPM: 39.5
Sample A Male 42.3
Sample B Male 39.5
Sample C Female 47.1
Sample D Female 45.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 13.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.0
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 16.1
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 9.9
Pallidum
Expression energy: 5.7
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 5.8
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 5.5

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