MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.1 nTPM
HPA Brain:159.7 nTPM
GTEx:46.1 nTPM
FANTOM5:272.3 Scaled Tags Per Million
Pig:71.8 nTPM
Mouse:53.7 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.7
1833 Male, age 53, unknown 155.3
2019 Male, age 18, unknown 151.8
1830 Male, age 51, unknown 149.3
2411 Female, age 72, unknown 142.9
1870 Female, age 42, unknown 130.5
2828 Female, age 72, unknown 107.8
2666 Male, age 74, left hemisphere 101.3
1827 Male, age 72, unknown 87.6
2586 Male, age 75, left hemisphere 78.8
2219 Male, age 76, both hemispheres 71.7
Dorsal raphe nucleus
nTPM: 90.5
2750 Male, age 76, both hemispheres 147.6
1828 Male, age 53, unknown 95.5
2016 Female, age 72, unknown 88.7
2047 Male, age 72, unknown 63.5
2298 Female, age 72, unknown 57.0
Inferior colliculus
nTPM: 89.8
1890 Male, age 53, unknown 96.0
2849 Male, age 72, unknown 94.7
1848 Female, age 42, unknown 92.7
2097 Female, age 72, unknown 76.1
Median raphe nucleus
nTPM: 96.1
2220 Male, age 76, midline 96.1
Periaquaductal grey, anterior
nTPM: 80.9
2502 Female, age 75, unknown 101.5
1947 Male, age 18, unknown 80.0
1795 Male, age 51, unknown 61.3
Periaquaductal grey, dorsal
nTPM: 87.5
2850 Male, age 76, both hemispheres 119.2
2464 Female, age 72, unknown 99.7
1831 Male, age 72, unknown 73.7
1840 Male, age 53, unknown 57.3
Periaquaductal grey, lateral
nTPM: 95.2
2140 Male, age 76, both hemispheres 131.4
2053 Male, age 18, unknown 77.2
2272 Male, age 74, both hemispheres 77.1
Pretectal area
nTPM: 83.0
2316 Male, age 76, right hemisphere 140.2
1815 Male, age 53, unknown 101.8
2825 Male, age 18, unknown 90.0
1817 Female, age 42, unknown 89.4
2007 Male, age 72, unknown 81.7
2407 Male, age 75, both hemispheres 81.2
2667 Female, age 75, unknown 79.2
2273 Male, age 74, both hemispheres 77.4
2224 Female, age 72, unknown 68.3
1944 Female, age 72, unknown 53.7
1816 Male, age 51, unknown 50.1
Red nucleus
nTPM: 159.7
1865 Male, age 51, unknown 198.9
1904 Male, age 53, unknown 185.7
2769 Male, age 72, unknown 179.1
2227 Male, age 72, unknown 178.3
1821 Female, age 72, unknown 175.1
2785 Male, age 18, unknown 162.8
2823 Male, age 76, right hemisphere 161.5
1954 Female, age 42, unknown 155.0
2503 Female, age 72, unknown 151.9
2588 Male, age 74, left hemisphere 151.0
2725 Female, age 75, unknown 117.1
2584 Male, age 75, left hemisphere 100.3
Substantia nigra
nTPM: 93.7
2409 Female, age 72, unknown 128.3
2590 Female, age 75, unknown 107.9
1851 Male, age 51, unknown 104.9
2699 Male, age 18, unknown 95.6
2583 Male, age 75, right hemisphere 94.5
2241 Male, age 72, unknown 93.0
1889 Female, age 72, unknown 88.8
2665 Male, age 74, both hemispheres 77.5
1941 Male, age 53, unknown 77.0
1916 Female, age 42, unknown 69.2
Superior colliculus
nTPM: 95.9
1995 Male, age 72, unknown 130.8
1913 Female, age 42, unknown 129.5
1895 Male, age 76, right hemisphere 119.8
1839 Male, age 51, unknown 113.2
2587 Male, age 74, left hemisphere 102.8
2668 Female, age 75, unknown 84.1
1796 Male, age 53, unknown 74.0
2664 Male, age 75, both hemispheres 69.4
2087 Female, age 72, unknown 68.0
2261 Male, age 18, unknown 67.9
Ventral tegmental area
nTPM: 103.1
2223 Female, age 72, unknown 129.3
2410 Female, age 72, unknown 123.7
2218 Male, age 76, both hemispheres 99.5
2021 Male, age 53, unknown 90.8
1942 Male, age 51, unknown 90.6
1915 Female, age 42, unknown 84.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.1
Samples: 183

Max nTPM: 159.9
Min nTPM: 10.3
Std nTPM: 20.6
Median nTPM: 42.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 159.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 132.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 114.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 100.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 90.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 90.3
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 84.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 81.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 81.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 76.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 272.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 272.3
FF:10158-103A5 76 years, female 272.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.3
Samples: 4

Max nTPM: 111.9
Min nTPM: 56.2
Sample A Female 56.2
Sample B Female 56.5
Sample C Male 60.6
Sample D Male 111.9
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 98.1
Min nTPM: 49.1
Sample A Female 98.1
Sample B Female 79.0
Sample C Male 49.1
Sample D Male 61.1
Periaqueductal gray
nTPM: 58.2
Samples: 3

Max nTPM: 74.2
Min nTPM: 45.3
Sample B Female 74.2
Sample C Male 45.3
Sample D Male 55.2
Superior colliculi
nTPM: 57.2
Samples: 4

Max nTPM: 71.9
Min nTPM: 39.3
Sample A Female 58.3
Sample B Female 39.3
Sample C Male 59.2
Sample D Male 71.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.8
Samples: 4

Max nTPM: 64.7
Min nTPM: 43.6
Sample A Male 43.6
Sample B Male 51.7
Sample C Female 64.7
Sample D Female 55.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70194660 Antisense, RP_050517_01_H04, Mouse strain C57BL/6J (56 days, male) 0.6

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