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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:246.9 nTPM
GTEx:246.9 nTPM
FANTOM5:389.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054097
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 246.9
Samples: 170

Max nTPM: 1252.9
Min nTPM: 26.0
Std nTPM: 215.4
Median nTPM: 175.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1252.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1152.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 967.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 931.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 717.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 716.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 704.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 685.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 681.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 668.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 652.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 588.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 585.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 567.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 566.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 562.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 561.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 547.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 530.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 525.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 524.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 522.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 496.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 465.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 459.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 448.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 443.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 438.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 435.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 432.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 416.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 409.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 404.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 391.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 390.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 386.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 376.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 373.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 347.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 339.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 327.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 326.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 323.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 320.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 317.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 303.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 300.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 299.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 293.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 289.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 287.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 278.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 272.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 272.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 270.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 265.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 255.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 251.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 247.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 241.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 240.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 238.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 237.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 234.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 234.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 226.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 225.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 224.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 222.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 219.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 219.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 217.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 217.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 206.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 202.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 201.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 200.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 199.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 195.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 191.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 189.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 189.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 187.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 185.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 175.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 174.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 172.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 166.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 165.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 163.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 162.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 159.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 159.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 154.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 150.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 149.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 149.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 147.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 145.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 144.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 143.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 140.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 140.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 137.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 135.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 133.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 132.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 126.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 125.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 121.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 121.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 119.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 118.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 117.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 117.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 116.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 114.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 110.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 109.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 107.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 107.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 106.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 104.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 104.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 104.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 100.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 98.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 93.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 92.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 92.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 92.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 88.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 88.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 88.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 84.3
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 82.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 81.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 80.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 79.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 79.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 78.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 78.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 78.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 77.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 75.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 71.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 69.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 68.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 66.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 66.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 61.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 58.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 58.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 57.1
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 53.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 52.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 50.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 40.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 39.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 39.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 39.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 38.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 36.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 35.7
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 35.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 32.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 31.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 30.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 29.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 26.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

389.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 389.5
FF:10204-103F6 68 years, female 389.5

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