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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
330.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 216.7
1827
Male, age 72, unknown
266.9
1870
Female, age 42, unknown
248.3
2219
Male, age 76, both hemispheres
246.8
2411
Female, age 72, unknown
244.3
1833
Male, age 53, unknown
237.4
2666
Male, age 74, left hemisphere
207.1
2586
Male, age 75, left hemisphere
200.3
1830
Male, age 51, unknown
197.2
2828
Female, age 72, unknown
183.6
2019
Male, age 18, unknown
135.4
Dorsal raphe nucleus nTPM: 259.9
2047
Male, age 72, unknown
304.4
2298
Female, age 72, unknown
287.6
1828
Male, age 53, unknown
260.1
2750
Male, age 76, both hemispheres
245.2
2016
Female, age 72, unknown
202.2
Inferior colliculus nTPM: 245.4
2849
Male, age 72, unknown
282.0
1848
Female, age 42, unknown
242.6
2097
Female, age 72, unknown
240.0
1890
Male, age 53, unknown
217.1
Median raphe nucleus nTPM: 330.1
2220
Male, age 76, midline
330.1
Periaquaductal grey, anterior nTPM: 249.6
1947
Male, age 18, unknown
322.8
1795
Male, age 51, unknown
229.0
2502
Female, age 75, unknown
197.0
Periaquaductal grey, dorsal nTPM: 247.8
1840
Male, age 53, unknown
286.8
2850
Male, age 76, both hemispheres
265.1
2464
Female, age 72, unknown
224.2
1831
Male, age 72, unknown
215.0
Periaquaductal grey, lateral nTPM: 216.7
2140
Male, age 76, both hemispheres
235.5
2053
Male, age 18, unknown
224.5
2272
Male, age 74, both hemispheres
190.0
Pretectal area nTPM: 225.9
2224
Female, age 72, unknown
287.9
2825
Male, age 18, unknown
279.6
1816
Male, age 51, unknown
234.0
2667
Female, age 75, unknown
231.2
1944
Female, age 72, unknown
221.4
2007
Male, age 72, unknown
219.3
1817
Female, age 42, unknown
211.2
1815
Male, age 53, unknown
209.1
2273
Male, age 74, both hemispheres
199.7
2316
Male, age 76, right hemisphere
198.9
2407
Male, age 75, both hemispheres
192.0
Red nucleus nTPM: 192.6
1821
Female, age 72, unknown
247.6
2725
Female, age 75, unknown
242.7
1954
Female, age 42, unknown
205.5
2503
Female, age 72, unknown
200.6
2588
Male, age 74, left hemisphere
196.4
2823
Male, age 76, right hemisphere
190.7
2227
Male, age 72, unknown
189.1
2769
Male, age 72, unknown
181.6
1865
Male, age 51, unknown
181.5
1904
Male, age 53, unknown
175.0
2584
Male, age 75, left hemisphere
167.5
2785
Male, age 18, unknown
132.4
Substantia nigra nTPM: 249.0
1916
Female, age 42, unknown
351.4
2699
Male, age 18, unknown
288.1
1851
Male, age 51, unknown
272.5
1941
Male, age 53, unknown
251.3
1889
Female, age 72, unknown
251.1
2241
Male, age 72, unknown
246.5
2665
Male, age 74, both hemispheres
226.4
2590
Female, age 75, unknown
224.0
2409
Female, age 72, unknown
200.7
2583
Male, age 75, right hemisphere
177.8
Superior colliculus nTPM: 207.4
1895
Male, age 76, right hemisphere
244.2
1839
Male, age 51, unknown
233.2
2261
Male, age 18, unknown
229.5
1796
Male, age 53, unknown
216.5
2587
Male, age 74, left hemisphere
216.5
2668
Female, age 75, unknown
211.4
2664
Male, age 75, both hemispheres
206.7
2087
Female, age 72, unknown
193.9
1913
Female, age 42, unknown
174.8
1995
Male, age 72, unknown
147.0
Ventral tegmental area nTPM: 261.9
1915
Female, age 42, unknown
314.4
2218
Male, age 76, both hemispheres
292.1
2410
Female, age 72, unknown
246.9
2021
Male, age 53, unknown
240.2
2223
Female, age 72, unknown
239.7
1942
Male, age 51, unknown
238.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
476.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 476.6
Samples: 183
Max nTPM: 1073.0
Min nTPM: 183.0
Std nTPM: 144.4
Median nTPM: 462.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1073.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
921.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
836.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
828.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
824.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
758.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
754.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
734.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
731.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
730.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
722.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
716.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
705.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
691.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
690.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
689.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
681.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
681.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
676.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
672.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
667.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
666.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
666.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
662.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
644.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
632.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
613.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
612.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
607.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
605.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
604.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
601.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
601.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
601.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
600.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
596.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
595.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
595.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
593.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
580.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
579.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
574.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
569.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
567.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
567.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
565.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
564.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
563.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
555.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
552.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
551.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
544.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
542.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
540.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
538.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
536.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
533.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
529.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
528.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
525.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
525.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
521.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
519.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
516.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
509.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
509.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
508.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
507.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
507.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
506.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
504.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
504.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
503.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
496.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
496.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
491.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
490.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
490.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
488.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
487.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
486.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
482.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
479.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
476.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
474.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
471.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
471.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
470.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
470.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
464.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
464.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
462.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
458.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
456.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
454.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
453.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
452.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
449.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
445.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
442.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
442.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
437.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
437.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
437.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
428.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
427.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
426.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
423.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
421.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
420.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
419.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
416.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
412.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
412.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
409.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
407.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
407.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
403.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
402.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
401.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
397.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
392.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
392.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
392.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
392.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
391.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
385.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
383.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
383.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
380.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
378.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
378.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
377.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
377.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
376.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
375.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
369.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
366.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
365.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
365.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
364.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
361.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
360.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
359.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
354.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
349.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
347.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
345.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
344.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
342.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
342.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
338.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
335.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
334.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
331.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
331.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
331.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
328.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
325.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
325.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
323.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
321.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
314.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
311.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
311.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
310.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
305.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
302.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
297.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
295.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
288.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
283.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
280.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
278.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
278.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
270.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
266.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
265.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
261.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
256.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
253.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
220.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
183.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 181.3
Samples: 4
Max nTPM: 277.4
Min nTPM: 81.1
Sample A
Female
277.4
Sample B
Female
139.9
Sample C
Male
226.6
Sample D
Male
81.1
Midbrain nTPM: 193.8
Samples: 4
Max nTPM: 218.9
Min nTPM: 157.5
Sample A
Female
157.5
Sample B
Female
183.2
Sample C
Male
218.9
Sample D
Male
215.5
Periaqueductal gray nTPM: 193.0
Samples: 3
Max nTPM: 240.0
Min nTPM: 163.1
Sample B
Female
175.8
Sample C
Male
240.0
Sample D
Male
163.1
Superior colliculi nTPM: 188.5
Samples: 4
Max nTPM: 237.9
Min nTPM: 128.2
Sample A
Female
237.9
Sample B
Female
128.2
Sample C
Male
210.5
Sample D
Male
177.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
401.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 401.2
Samples: 4
Max nTPM: 414.0
Min nTPM: 372.1
Sample A
Male
414.0
Sample B
Male
408.5
Sample C
Female
372.1
Sample D
Female
410.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.