HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:18.1 nTPM
GTEx:15.4 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:0.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 18.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.8
1911 Female, age 85, right hemisphere 17.5
2529 Female, age 94, left hemisphere 12.7
2148 Female, age 91, left hemisphere 12.0
2621 Female, age 67, right hemisphere 11.8
1898 Male, age 80, left hemisphere 11.7
1855 Male, age 76, left hemisphere 11.0
Dentate gyrus
nTPM: 13.8
2010 Male, age 76, both hemispheres 17.4
2528 Male, age 74, both hemispheres 17.2
2246 Female, age 85, both hemispheres 16.2
2530 Female, age 94, left hemisphere 12.7
2531 Female, age 67, both hemispheres 11.0
1927 Female, age 91, both hemispheres 8.4
Entorhinal gyrus
nTPM: 12.9
2117 Female, age 91, right hemisphere 19.9
2764 Male, age 80, right hemisphere 15.2
2686 Male, age 75, right hemisphere 11.5
1787 Male, age 76, left hemisphere 11.1
2613 Female, age 94, left hemisphere 10.4
1938 Female, age 85, left hemisphere 9.5
Hippocampus, CA1
nTPM: 13.1
2082 Female, age 91, right hemisphere 20.7
2527 Male, age 74, both hemispheres 16.2
1873 Female, age 85, both hemispheres 13.4
2749 Male, age 80, left hemisphere 8.7
2045 Male, age 76, both hemispheres 6.5
Hippocampus, CA2
nTPM: 14.7
2113 Female, age 91, right hemisphere 19.1
2249 Male, age 74, both hemispheres 18.8
1940 Female, age 85, left hemisphere 18.2
2437 Female, age 94, left hemisphere 12.9
1963 Male, age 80, left hemisphere 12.6
1892 Male, age 76, both hemispheres 6.5
Hippocampus, CA3
nTPM: 11.0
1891 Female, age 85, both hemispheres 19.0
2436 Male, age 74, both hemispheres 10.8
2137 Male, age 80, left hemisphere 10.3
1867 Male, age 76, both hemispheres 9.9
2620 Female, age 94, left hemisphere 8.3
2861 Female, age 67, both hemispheres 7.8
Parahippocampal cortex
nTPM: 11.8
2692 Male, age 74, both hemispheres 19.9
1990 Female, age 91, right hemisphere 16.5
2018 Male, age 76, both hemispheres 14.0
1850 Male, age 80, both hemispheres 10.9
2532 Female, age 72, left hemisphere 10.8
1933 Female, age 85, both hemispheres 9.8
2622 Female, age 67, right hemisphere 9.4
2245 Female, age 91, both hemispheres 9.1
2250 Female, age 67, right hemisphere 8.9
2693 Female, age 94, both hemispheres 8.5
Perirhinal gyrus
nTPM: 7.9
1847 Female, age 91, left hemisphere 8.7
1794 Male, age 80, right hemisphere 8.5
2521 Female, age 94, right hemisphere 8.4
2848 Male, age 76, right hemisphere 7.7
1841 Female, age 85, right hemisphere 6.1
Subiculum
nTPM: 18.1
2042 Male, age 76, both hemispheres 28.7
1901 Male, age 80, both hemispheres 20.9
2619 Male, age 74, both hemispheres 16.4
1977 Female, age 85, both hemispheres 15.3
2729 Female, age 91, right hemisphere 14.9
2438 Female, age 94, left hemisphere 12.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 15.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.4
Samples: 255

Max nTPM: 94.8
Min nTPM: 1.9
Std nTPM: 14.4
Median nTPM: 10.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 94.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 90.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 85.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 79.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 61.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 58.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 53.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 53.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 50.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 46.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 45.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.9
FF:10169-103B7 60 years, female 23.8
FF:10153-102I9 76 years, female 12.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 3.6
Pig sample Sample description nTPM
Subiculum
nTPM: 1.1
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.6
Sample A Female 1.2
Sample B Female 0.6
Sample C Male 0.8
Sample D Male 1.8
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 1.5
Sample A Female 5.1
Sample B Female 2.7
Sample C Male 5.0
Sample D Male 1.5
Entorhinal cortex
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.3
Sample A Female 1.0
Sample B Female 0.3
Sample C Male 0.6
Sample D Male 0.9
Ventral hippocampus
nTPM: 3.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 1.7
Sample A Female 5.2
Sample B Female 1.7
Sample C Male 4.1
Sample D Male 2.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.0
Hippocampal formation
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.2
Sample C Female 0.3
Sample D Female 0.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69981121 Antisense, RP_050512_04_F11, Mouse strain C57BL/6J (56 days, male) 0.1
74957887 Antisense, RP_060315_05_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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