MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1306.8 nTPM
HPA Brain:355.0 nTPM
GTEx:1306.8 nTPM
FANTOM5:1750.8 Scaled Tags Per Million
Pig:462.2 nTPM
Mouse:267.6 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 355.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 265.1
1870 Female, age 42, unknown 384.6
2019 Male, age 18, unknown 343.8
1833 Male, age 53, unknown 301.7
1830 Male, age 51, unknown 300.1
2828 Female, age 72, unknown 280.8
2666 Male, age 74, left hemisphere 275.6
2411 Female, age 72, unknown 272.4
1827 Male, age 72, unknown 212.0
2219 Male, age 76, both hemispheres 160.6
2586 Male, age 75, left hemisphere 119.8
Dorsal raphe nucleus
nTPM: 348.6
1828 Male, age 53, unknown 423.8
2298 Female, age 72, unknown 390.9
2016 Female, age 72, unknown 361.0
2750 Male, age 76, both hemispheres 323.2
2047 Male, age 72, unknown 244.1
Inferior colliculus
nTPM: 260.8
2097 Female, age 72, unknown 344.8
1848 Female, age 42, unknown 264.2
1890 Male, age 53, unknown 232.9
2849 Male, age 72, unknown 201.4
Median raphe nucleus
nTPM: 271.0
2220 Male, age 76, midline 271.0
Periaquaductal grey, anterior
nTPM: 311.2
2502 Female, age 75, unknown 415.5
1947 Male, age 18, unknown 272.3
1795 Male, age 51, unknown 245.8
Periaquaductal grey, dorsal
nTPM: 275.4
2850 Male, age 76, both hemispheres 324.8
1831 Male, age 72, unknown 309.3
2464 Female, age 72, unknown 272.0
1840 Male, age 53, unknown 195.6
Periaquaductal grey, lateral
nTPM: 305.6
2272 Male, age 74, both hemispheres 330.4
2053 Male, age 18, unknown 295.3
2140 Male, age 76, both hemispheres 291.1
Pretectal area
nTPM: 262.6
1817 Female, age 42, unknown 325.1
2316 Male, age 76, right hemisphere 304.9
2224 Female, age 72, unknown 303.2
2667 Female, age 75, unknown 290.8
2273 Male, age 74, both hemispheres 290.0
2007 Male, age 72, unknown 278.1
1815 Male, age 53, unknown 260.4
1944 Female, age 72, unknown 254.3
2825 Male, age 18, unknown 239.6
1816 Male, age 51, unknown 209.6
2407 Male, age 75, both hemispheres 132.7
Red nucleus
nTPM: 355.0
1954 Female, age 42, unknown 472.2
1821 Female, age 72, unknown 466.3
1865 Male, age 51, unknown 421.4
2503 Female, age 72, unknown 398.2
2823 Male, age 76, right hemisphere 392.8
2769 Male, age 72, unknown 382.5
2227 Male, age 72, unknown 360.5
1904 Male, age 53, unknown 351.8
2785 Male, age 18, unknown 347.4
2725 Female, age 75, unknown 289.3
2584 Male, age 75, left hemisphere 191.5
2588 Male, age 74, left hemisphere 186.5
Substantia nigra
nTPM: 349.4
2409 Female, age 72, unknown 499.8
2699 Male, age 18, unknown 396.6
1851 Male, age 51, unknown 392.9
2665 Male, age 74, both hemispheres 383.4
2241 Male, age 72, unknown 382.5
1889 Female, age 72, unknown 309.0
2590 Female, age 75, unknown 300.3
1916 Female, age 42, unknown 299.8
1941 Male, age 53, unknown 297.1
2583 Male, age 75, right hemisphere 232.5
Superior colliculus
nTPM: 274.3
1913 Female, age 42, unknown 405.5
1995 Male, age 72, unknown 340.6
2587 Male, age 74, left hemisphere 333.1
1895 Male, age 76, right hemisphere 294.1
1796 Male, age 53, unknown 278.3
2087 Female, age 72, unknown 267.9
1839 Male, age 51, unknown 257.5
2668 Female, age 75, unknown 228.0
2261 Male, age 18, unknown 201.6
2664 Male, age 75, both hemispheres 136.8
Ventral tegmental area
nTPM: 343.7
2410 Female, age 72, unknown 397.3
2021 Male, age 53, unknown 365.5
1915 Female, age 42, unknown 362.4
2218 Male, age 76, both hemispheres 313.8
1942 Male, age 51, unknown 313.0
2223 Female, age 72, unknown 310.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1306.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1306.8
Samples: 183

Max nTPM: 6706.7
Min nTPM: 356.2
Std nTPM: 613.5
Median nTPM: 1176.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 6706.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 3700.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 2745.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2655.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2593.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 2311.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2252.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2231.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2103.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2093.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2058.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1750.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1750.8
FF:10158-103A5 76 years, female 1750.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 462.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 462.2
Samples: 4

Max nTPM: 657.5
Min nTPM: 334.3
Sample A Female 493.4
Sample B Female 657.5
Sample C Male 334.3
Sample D Male 363.6
Midbrain
nTPM: 319.9
Samples: 4

Max nTPM: 439.7
Min nTPM: 213.6
Sample A Female 439.7
Sample B Female 350.4
Sample C Male 275.9
Sample D Male 213.6
Periaqueductal gray
nTPM: 273.0
Samples: 3

Max nTPM: 330.9
Min nTPM: 215.4
Sample B Female 330.9
Sample C Male 272.7
Sample D Male 215.4
Superior colliculi
nTPM: 452.6
Samples: 4

Max nTPM: 707.9
Min nTPM: 332.2
Sample A Female 430.4
Sample B Female 707.9
Sample C Male 332.2
Sample D Male 339.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 267.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 267.7
Samples: 4

Max nTPM: 274.4
Min nTPM: 256.5
Sample A Male 269.5
Sample B Male 270.2
Sample C Female 256.5
Sample D Female 274.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.8
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.6

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