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  • SUMMARY

  • TISSUE

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  • PPIB
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:161.2 nTPM
FANTOM5:240.7 Scaled Tags Per Million
Pig:65.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012720Antibody CAB011487
Glial cells MediumMedium
Neuronal cells LowNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 161.2
Samples: 300

Max nTPM: 441.3
Min nTPM: 76.2
Std nTPM: 46.2
Median nTPM: 154.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 441.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 407.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 339.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 297.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 290.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 284.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 278.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 276.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 268.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 266.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 263.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 259.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 255.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 248.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 239.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 233.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 230.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 229.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 227.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 226.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 224.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 223.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 223.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 222.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 220.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 219.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 218.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 218.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 214.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 213.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 213.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 213.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 212.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 211.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 209.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 209.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 207.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 205.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 201.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 201.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 199.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 199.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 199.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 198.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 198.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 198.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 198.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 197.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 197.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 196.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 196.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 195.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 195.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 193.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 193.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 192.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 190.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 189.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 189.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 189.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 188.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 188.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 188.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 187.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 187.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 187.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 186.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 185.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 185.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 184.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 184.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 184.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 183.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 183.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 183.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 182.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 182.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 182.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 181.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 181.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 180.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 180.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 180.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 178.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 178.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 178.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 177.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 177.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 176.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 176.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 175.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 175.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 173.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 173.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 171.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 170.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 170.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 170.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 169.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 169.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 169.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 169.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 168.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 168.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 168.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 167.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 166.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 166.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 165.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 165.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 165.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 165.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 164.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 164.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 164.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 164.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 164.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 163.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 163.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 163.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 163.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 162.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 162.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 161.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 161.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 160.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 160.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 160.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 160.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 159.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 159.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 159.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 159.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 159.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 158.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 157.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 157.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 157.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 157.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 156.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 155.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 155.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 155.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 154.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 154.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 154.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 154.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 153.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 152.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 152.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 152.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 151.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 151.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 151.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 151.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 150.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 150.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 150.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 150.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 149.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 149.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 149.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 149.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 148.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 148.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 148.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 147.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 147.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 147.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 146.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 145.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 145.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 145.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 145.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 145.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 145.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 144.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 144.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 144.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 144.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 144.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 143.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 143.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 143.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 143.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 142.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 142.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 142.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 142.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 142.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 141.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 140.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 140.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 140.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 139.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 139.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 138.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 137.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 137.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 136.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 135.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 135.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 135.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 134.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 134.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 134.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 134.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 133.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 133.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 132.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 131.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 131.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 130.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 130.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 130.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 129.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 129.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 128.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 128.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 128.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 127.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 127.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 127.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 127.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 127.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 125.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 125.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 123.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 123.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 122.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 122.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 121.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 121.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 121.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 121.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 120.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 119.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 119.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 118.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 118.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 118.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 118.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 118.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 117.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 116.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 116.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 115.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 115.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 115.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 115.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 114.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 114.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 113.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 112.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 112.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 111.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 111.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 109.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 109.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 108.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 108.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 106.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 102.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 102.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 102.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 101.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 101.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 101.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 99.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 97.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 97.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 94.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 90.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 84.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 83.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 76.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 240.7
FF:10164-103B2 76 years, female 240.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.2
Pig sample Sample description nTPM
Caudate
nTPM: 65.2
Samples: 4

Max nTPM: 71.0
Min nTPM: 60.3
Sample A Female 62.2
Sample B Female 67.2
Sample C Male 71.0
Sample D Male 60.3

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