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  • MAPRE2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:130.8 nTPM
HPA Brain:185.0 nTPM
GTEx:130.8 nTPM
FANTOM5:279.2 Scaled Tags Per Million
Pig:340.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 145.4
2816 Male, age 47, midline 157.1
1981 Female, age 72, midline 154.5
2048 Male, age 55, midline 144.7
2565 Male, age 75, midline 137.9
2194 Female, age 79, both hemispheres 132.8
Cervical spinal cord, dorsal horn
nTPM: 185.0
2296 Male, age 66, both hemispheres 311.1
2173 Female, age 72, unknown 210.9
2069 Male, age 47, both hemispheres 170.8
1877 Male, age 55, unknown 148.4
2297 Male, age 75, both hemispheres 135.8
2721 Male, age 90, both hemispheres 133.2
Cervical spinal cord, ventral horn
nTPM: 150.1
2098 Female, age 72, unknown 183.3
2068 Male, age 55, unknown 166.6
2820 Female, age 79, both hemispheres 150.5
2480 Male, age 75, both hemispheres 148.1
2295 Male, age 66, both hemispheres 134.5
2809 Male, age 90, both hemispheres 117.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 130.8
Samples: 204

Max nTPM: 242.6
Min nTPM: 50.0
Std nTPM: 42.8
Median nTPM: 129.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 242.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 241.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 234.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 233.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 232.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 230.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 229.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 217.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 208.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 202.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 201.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 199.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 198.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 198.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 197.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 193.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 193.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 192.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 192.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 189.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 187.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 184.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 184.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 183.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 179.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 176.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 176.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 176.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 176.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 175.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 175.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 175.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 172.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 172.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 171.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 171.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 169.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 167.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 167.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 167.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 166.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 165.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 165.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 165.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 164.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 164.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 162.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 161.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 161.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 160.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 160.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 158.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 157.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 156.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 156.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 153.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 151.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 151.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 150.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 150.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 149.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 149.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 148.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 147.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 145.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 145.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 144.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 143.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 143.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 143.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 142.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 142.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 140.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 140.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 140.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 139.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 139.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 138.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 138.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 138.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 138.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 136.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 136.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 136.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 134.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 134.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 133.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 133.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 133.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 132.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 131.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 130.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 130.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 130.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 128.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 128.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 127.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 126.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 125.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 123.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 123.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 123.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 122.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 120.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 119.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 117.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 117.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 117.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 116.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 115.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 115.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 114.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 114.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 113.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 113.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 113.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 112.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 112.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 112.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 112.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 111.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 111.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 110.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 108.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 108.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 107.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 107.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 104.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 103.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 102.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 101.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 100.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 100.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 99.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 98.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 96.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 93.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 92.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 91.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 88.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 88.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 88.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 88.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 86.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 84.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 84.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 84.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 80.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 79.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 79.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 78.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 76.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 76.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 76.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 76.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 74.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 73.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 73.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 73.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 72.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 72.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 70.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 67.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 64.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 64.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 64.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 58.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 56.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 53.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 50.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 50.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 279.2
FF:10181-103D1 60 years, female 338.6
FF:10159-103A6 76 years, female 219.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 263.7
Samples: 4

Max nTPM: 306.5
Min nTPM: 197.0
Sample A Female 306.5
Sample B Female 257.7
Sample C Male 197.0
Sample D Male 293.5
Ventral spinal cord
nTPM: 340.3
Samples: 4

Max nTPM: 398.0
Min nTPM: 277.0
Sample A Female 398.0
Sample B Female 309.0
Sample C Male 277.0
Sample D Male 377.1

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