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FAM102A
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  • FAM102A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:54.6 nTPM
HPA Brain:119.7 nTPM
GTEx:54.6 nTPM
FANTOM5:145.2 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:37.8 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.7
Sample id Sample description nTPM
Amygdala
nTPM: 109.7
2814 Male, age 76, right hemisphere 134.5
2695 Female, age 67, right hemisphere 119.5
2517 Female, age 94, left hemisphere 114.8
2514 Male, age 75, right hemisphere 95.4
1987 Female, age 91, left hemisphere 84.2
Basal amygdala
nTPM: 118.6
2827 Female, age 67, right hemisphere 138.5
2110 Male, age 80, left hemisphere 126.4
2609 Male, age 75, right hemisphere 124.2
2685 Female, age 94, left hemisphere 121.1
1955 Male, age 76, both hemispheres 103.3
2243 Female, age 91, right hemisphere 98.0
Central amygdala
nTPM: 110.1
1905 Male, age 76, both hemispheres 126.0
2826 Female, age 94, left hemisphere 115.7
2515 Male, age 75, right hemisphere 112.6
2239 Male, age 80, left hemisphere 108.8
2701 Female, age 91, right hemisphere 87.6
Corticomedial amygdala
nTPM: 103.3
2535 Female, age 67, right hemisphere 128.2
2829 Male, age 80, left hemisphere 121.6
2428 Male, age 75, right hemisphere 101.4
2242 Female, age 91, right hemisphere 90.7
2429 Female, age 94, left hemisphere 90.1
2240 Male, age 76, both hemispheres 88.0
Lateral amygdala
nTPM: 119.7
2830 Female, age 67, right hemisphere 148.1
2256 Male, age 80, left hemisphere 124.7
2516 Male, age 75, right hemisphere 124.7
2534 Female, age 94, left hemisphere 111.2
1883 Male, age 76, both hemispheres 110.7
2255 Female, age 91, right hemisphere 98.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.6
Samples: 181

Max nTPM: 81.6
Min nTPM: 15.6
Std nTPM: 12.6
Median nTPM: 55.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 81.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 80.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 79.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 75.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 75.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 74.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 73.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 72.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 72.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 71.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 71.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 70.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 69.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 69.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 68.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 68.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 68.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 68.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 67.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 67.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 66.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 66.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 66.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 65.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 65.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 64.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 64.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 64.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 64.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 64.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 63.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 63.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 63.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 63.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 63.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 63.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 63.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 63.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 63.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 62.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 62.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 62.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 62.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 61.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 61.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 60.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 60.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 60.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 59.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 59.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 59.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 58.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 58.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 58.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 58.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 57.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 57.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 57.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 57.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 57.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 57.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 55.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 55.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 55.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 55.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 54.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 54.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 54.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 53.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 53.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 53.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 53.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 53.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 53.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 53.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 52.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 52.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 52.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 52.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 52.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 52.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 51.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 51.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 51.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 51.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 51.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 50.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 50.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 50.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 50.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 49.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 48.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 48.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 48.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 48.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 47.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 47.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 46.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 45.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 45.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 45.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 44.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 44.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 43.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 43.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 42.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 42.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 42.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 41.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 41.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 41.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 40.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 40.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 40.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 38.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 37.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 35.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 34.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 34.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 33.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 33.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 33.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 31.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 31.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 30.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 30.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 28.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 26.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 25.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 25.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 19.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 15.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 145.2
FF:10151-102I7 76 years, female 145.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.8
Pig sample Sample description nTPM
Amygdala
nTPM: 38.8
Samples: 4

Max nTPM: 44.2
Min nTPM: 35.5
Sample A Female 44.2
Sample B Female 35.7
Sample C Male 39.8
Sample D Male 35.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.2
Sample A Male 36.7
Sample B Male 38.4
Sample C Female 41.0
Sample D Female 35.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
75826580 Antisense, RP_060601_01_B10, Mouse strain C57BL/6J (56 days, male) 2.7

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