MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:44.1 nTPM
GTEx:27.6 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:28.2 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.4
2586 Male, age 75, left hemisphere 46.4
2019 Male, age 18, unknown 42.6
2828 Female, age 72, unknown 39.1
1830 Male, age 51, unknown 38.5
1833 Male, age 53, unknown 36.8
1870 Female, age 42, unknown 36.8
2666 Male, age 74, left hemisphere 36.2
2411 Female, age 72, unknown 35.5
1827 Male, age 72, unknown 32.8
2219 Male, age 76, both hemispheres 29.1
Dorsal raphe nucleus
nTPM: 28.6
2750 Male, age 76, both hemispheres 37.4
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 26.6
2016 Female, age 72, unknown 24.5
2298 Female, age 72, unknown 21.5
Inferior colliculus
nTPM: 29.2
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 30.1
1848 Female, age 42, unknown 29.9
2097 Female, age 72, unknown 25.7
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Periaquaductal grey, anterior
nTPM: 29.8
1947 Male, age 18, unknown 31.9
2502 Female, age 75, unknown 31.5
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 23.8
2464 Female, age 72, unknown 28.7
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 21.5
1840 Male, age 53, unknown 20.9
Periaquaductal grey, lateral
nTPM: 24.3
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 24.1
2272 Male, age 74, both hemispheres 23.8
Pretectal area
nTPM: 30.6
2007 Male, age 72, unknown 36.0
1817 Female, age 42, unknown 35.6
1815 Male, age 53, unknown 35.5
2667 Female, age 75, unknown 34.8
2407 Male, age 75, both hemispheres 34.7
2316 Male, age 76, right hemisphere 30.8
1944 Female, age 72, unknown 29.2
1816 Male, age 51, unknown 28.5
2825 Male, age 18, unknown 28.1
2224 Female, age 72, unknown 22.0
2273 Male, age 74, both hemispheres 21.3
Red nucleus
nTPM: 44.1
1865 Male, age 51, unknown 49.7
2769 Male, age 72, unknown 47.3
1904 Male, age 53, unknown 46.2
2227 Male, age 72, unknown 46.0
1821 Female, age 72, unknown 45.9
2588 Male, age 74, left hemisphere 45.9
2823 Male, age 76, right hemisphere 45.0
2785 Male, age 18, unknown 43.8
1954 Female, age 42, unknown 43.5
2584 Male, age 75, left hemisphere 42.0
2503 Female, age 72, unknown 40.1
2725 Female, age 75, unknown 34.1
Substantia nigra
nTPM: 33.2
2583 Male, age 75, right hemisphere 39.7
1851 Male, age 51, unknown 37.6
2665 Male, age 74, both hemispheres 35.6
1916 Female, age 42, unknown 34.5
2699 Male, age 18, unknown 32.1
1889 Female, age 72, unknown 32.0
2409 Female, age 72, unknown 31.8
2590 Female, age 75, unknown 31.6
1941 Male, age 53, unknown 30.8
2241 Male, age 72, unknown 26.4
Superior colliculus
nTPM: 33.6
2664 Male, age 75, both hemispheres 39.4
1913 Female, age 42, unknown 38.5
2668 Female, age 75, unknown 36.8
1995 Male, age 72, unknown 35.3
1895 Male, age 76, right hemisphere 34.7
2587 Male, age 74, left hemisphere 32.3
1839 Male, age 51, unknown 32.1
1796 Male, age 53, unknown 29.2
2261 Male, age 18, unknown 28.9
2087 Female, age 72, unknown 28.6
Ventral tegmental area
nTPM: 31.0
2223 Female, age 72, unknown 34.4
2410 Female, age 72, unknown 34.1
1915 Female, age 42, unknown 30.6
2218 Male, age 76, both hemispheres 30.3
1942 Male, age 51, unknown 28.8
2021 Male, age 53, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.6
Samples: 183

Max nTPM: 48.4
Min nTPM: 16.7
Std nTPM: 5.9
Median nTPM: 26.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 46.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 46.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 45.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 42.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 42.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 39.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.2
Samples: 4

Max nTPM: 86.5
Min nTPM: 61.6
Sample A Female 86.5
Sample B Female 61.6
Sample C Male 73.6
Sample D Male 82.9
Midbrain
nTPM: 83.0
Samples: 4

Max nTPM: 114.0
Min nTPM: 62.3
Sample A Female 114.0
Sample B Female 83.4
Sample C Male 62.3
Sample D Male 72.3
Periaqueductal gray
nTPM: 65.8
Samples: 3

Max nTPM: 69.8
Min nTPM: 62.7
Sample B Female 69.8
Sample C Male 64.9
Sample D Male 62.7
Superior colliculi
nTPM: 77.6
Samples: 4

Max nTPM: 92.8
Min nTPM: 58.6
Sample A Female 92.8
Sample B Female 58.6
Sample C Male 73.6
Sample D Male 85.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.8
Sample A Male 31.2
Sample B Male 28.0
Sample C Female 24.8
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70429124 Antisense, RP_050614_01_A08, Mouse strain C57BL/6J (56 days, male) 4.3

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