MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.9 nTPM
HPA Brain:88.9 nTPM
GTEx:56.9 nTPM
FANTOM5:254.9 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:54.8 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.8
2411 Female, age 72, unknown 81.9
2019 Male, age 18, unknown 79.3
2219 Male, age 76, both hemispheres 78.1
1833 Male, age 53, unknown 77.0
1870 Female, age 42, unknown 73.2
1830 Male, age 51, unknown 71.7
2828 Female, age 72, unknown 69.7
2586 Male, age 75, left hemisphere 66.8
1827 Male, age 72, unknown 65.3
2666 Male, age 74, left hemisphere 65.1
Dorsal raphe nucleus
nTPM: 71.9
2750 Male, age 76, both hemispheres 91.5
1828 Male, age 53, unknown 73.3
2298 Female, age 72, unknown 66.5
2047 Male, age 72, unknown 66.3
2016 Female, age 72, unknown 62.0
Inferior colliculus
nTPM: 66.1
2849 Male, age 72, unknown 69.2
1848 Female, age 42, unknown 68.0
1890 Male, age 53, unknown 65.5
2097 Female, age 72, unknown 61.7
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Periaquaductal grey, anterior
nTPM: 61.1
1947 Male, age 18, unknown 63.2
2502 Female, age 75, unknown 61.9
1795 Male, age 51, unknown 58.2
Periaquaductal grey, dorsal
nTPM: 55.3
2464 Female, age 72, unknown 69.6
1840 Male, age 53, unknown 53.5
1831 Male, age 72, unknown 52.2
2850 Male, age 76, both hemispheres 45.8
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 71.6
2053 Male, age 18, unknown 53.4
2140 Male, age 76, both hemispheres 48.5
Pretectal area
nTPM: 69.0
2667 Female, age 75, unknown 80.5
2007 Male, age 72, unknown 78.4
1817 Female, age 42, unknown 78.1
1815 Male, age 53, unknown 72.7
1816 Male, age 51, unknown 69.5
2316 Male, age 76, right hemisphere 67.1
2224 Female, age 72, unknown 65.9
1944 Female, age 72, unknown 65.7
2273 Male, age 74, both hemispheres 65.1
2825 Male, age 18, unknown 61.5
2407 Male, age 75, both hemispheres 54.7
Red nucleus
nTPM: 88.9
2503 Female, age 72, unknown 98.9
2769 Male, age 72, unknown 97.8
1821 Female, age 72, unknown 96.6
2227 Male, age 72, unknown 94.9
2823 Male, age 76, right hemisphere 93.1
2785 Male, age 18, unknown 90.2
2588 Male, age 74, left hemisphere 89.9
2725 Female, age 75, unknown 87.9
1865 Male, age 51, unknown 86.2
1904 Male, age 53, unknown 84.4
1954 Female, age 42, unknown 78.3
2584 Male, age 75, left hemisphere 68.7
Substantia nigra
nTPM: 73.3
1916 Female, age 42, unknown 101.3
1851 Male, age 51, unknown 86.5
2699 Male, age 18, unknown 81.3
1941 Male, age 53, unknown 77.3
1889 Female, age 72, unknown 76.6
2409 Female, age 72, unknown 69.7
2590 Female, age 75, unknown 65.8
2583 Male, age 75, right hemisphere 63.1
2241 Male, age 72, unknown 59.4
2665 Male, age 74, both hemispheres 52.2
Superior colliculus
nTPM: 65.4
1895 Male, age 76, right hemisphere 75.1
1913 Female, age 42, unknown 71.9
2587 Male, age 74, left hemisphere 70.3
1995 Male, age 72, unknown 69.3
1796 Male, age 53, unknown 68.7
1839 Male, age 51, unknown 66.5
2087 Female, age 72, unknown 66.5
2668 Female, age 75, unknown 60.2
2261 Male, age 18, unknown 59.5
2664 Male, age 75, both hemispheres 46.2
Ventral tegmental area
nTPM: 74.9
2223 Female, age 72, unknown 82.6
2218 Male, age 76, both hemispheres 81.1
1915 Female, age 42, unknown 80.2
2410 Female, age 72, unknown 79.1
1942 Male, age 51, unknown 65.0
2021 Male, age 53, unknown 61.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.9
Samples: 183

Max nTPM: 105.4
Min nTPM: 27.0
Std nTPM: 15.3
Median nTPM: 55.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 105.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 101.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 101.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 100.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 99.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 93.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 85.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 84.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 84.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 84.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 83.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 254.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 254.9
FF:10158-103A5 76 years, female 254.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 30.7
Min nTPM: 14.8
Sample A Female 30.7
Sample B Female 17.0
Sample C Male 23.2
Sample D Male 14.8
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 27.6
Min nTPM: 19.7
Sample A Female 24.5
Sample B Female 19.7
Sample C Male 25.7
Sample D Male 27.6
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 20.2
Min nTPM: 16.7
Sample B Female 17.6
Sample C Male 20.2
Sample D Male 16.7
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 33.3
Min nTPM: 21.5
Sample A Female 33.3
Sample B Female 21.5
Sample C Male 27.9
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 56.2
Min nTPM: 51.4
Sample A Male 55.8
Sample B Male 51.4
Sample C Female 55.7
Sample D Female 56.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69261426 Antisense, RP_050215_01_E09, Mouse strain C57BL/6J (56 days, male) 3.6

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