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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:78.0 nTPM
HPA Brain:119.2 nTPM
GTEx:78.0 nTPM
FANTOM5:184.9 Scaled Tags Per Million
Pig:96.8 nTPM
Mouse:113.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.2
Sample id Sample description nTPM
Amygdala
nTPM: 62.8
2517 Female, age 94, left hemisphere 99.8
1987 Female, age 91, left hemisphere 90.6
2514 Male, age 75, right hemisphere 62.7
2695 Female, age 67, right hemisphere 32.5
2814 Male, age 76, right hemisphere 28.7
Basal amygdala
nTPM: 117.5
2243 Female, age 91, right hemisphere 183.7
2685 Female, age 94, left hemisphere 161.7
2110 Male, age 80, left hemisphere 107.3
2827 Female, age 67, right hemisphere 94.7
1955 Male, age 76, both hemispheres 81.3
2609 Male, age 75, right hemisphere 76.2
Central amygdala
nTPM: 99.1
2826 Female, age 94, left hemisphere 144.2
2239 Male, age 80, left hemisphere 137.1
2701 Female, age 91, right hemisphere 110.4
2515 Male, age 75, right hemisphere 82.7
1905 Male, age 76, both hemispheres 21.3
Corticomedial amygdala
nTPM: 119.2
2242 Female, age 91, right hemisphere 186.7
2829 Male, age 80, left hemisphere 129.2
2535 Female, age 67, right hemisphere 127.6
2429 Female, age 94, left hemisphere 116.4
2240 Male, age 76, both hemispheres 91.6
2428 Male, age 75, right hemisphere 63.8
Lateral amygdala
nTPM: 102.0
2534 Female, age 94, left hemisphere 172.2
2256 Male, age 80, left hemisphere 148.3
2255 Female, age 91, right hemisphere 136.3
2516 Male, age 75, right hemisphere 53.6
1883 Male, age 76, both hemispheres 51.1
2830 Female, age 67, right hemisphere 50.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 78.0
Samples: 181

Max nTPM: 182.8
Min nTPM: 12.8
Std nTPM: 32.7
Median nTPM: 73.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 182.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 180.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 173.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 170.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 158.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 141.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 141.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 136.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 136.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 136.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 135.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 131.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 125.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 123.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 119.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 118.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 117.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 116.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 116.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 114.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 113.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 113.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 112.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 109.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 109.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 108.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 108.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 108.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 107.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 106.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 105.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 104.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 103.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 102.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 102.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 101.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 101.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 98.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 96.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 94.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 92.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 89.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 89.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 89.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 88.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 88.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 85.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 84.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 84.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 83.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 82.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 81.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 81.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 80.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 80.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 79.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 78.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 77.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 77.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 76.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 76.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 73.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 72.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 71.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 71.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 71.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 70.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 67.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 66.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 66.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 66.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 64.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 64.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 63.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 62.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 62.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 61.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 61.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 61.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 61.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 59.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 58.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 58.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 57.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 55.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 54.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 54.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 54.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 53.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 53.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 52.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 48.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 47.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 45.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 43.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 43.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 43.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 42.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 42.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 41.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 41.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 41.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 39.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 39.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 38.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 38.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 38.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 37.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 37.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 37.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 37.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 36.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 36.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 36.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 34.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 34.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 27.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 18.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 12.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 184.9
FF:10151-102I7 76 years, female 184.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.8
Pig sample Sample description nTPM
Amygdala
nTPM: 96.8
Samples: 4

Max nTPM: 146.1
Min nTPM: 68.6
Sample A Female 146.1
Sample B Female 68.6
Sample C Male 71.6
Sample D Male 100.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 113.2
Samples: 4

Max nTPM: 124.8
Min nTPM: 101.0
Sample A Male 115.2
Sample B Male 111.8
Sample C Female 124.8
Sample D Female 101.0

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