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RPL13
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPL13
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:935.2 nTPM
FANTOM5:85.1 Scaled Tags Per Million
Pig:6.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051702
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

935.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 935.2
Samples: 300

Max nTPM: 2982.0
Min nTPM: 413.1
Std nTPM: 306.7
Median nTPM: 880.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2982.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2129.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1885.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1873.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1781.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1683.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1665.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1637.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1626.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1578.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1570.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1564.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1549.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1535.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1504.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1501.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1466.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1466.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1450.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1447.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1438.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1436.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1414.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1405.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1404.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1391.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1355.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1347.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1310.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1306.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1304.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1300.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1297.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1276.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1271.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1270.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1245.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1242.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1241.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1239.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1235.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1233.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1232.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1224.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1205.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1201.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1201.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1194.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1192.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1185.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1176.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1175.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1174.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1162.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1156.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1153.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1150.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1148.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1139.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1137.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1117.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1117.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1112.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1110.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1106.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1106.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1100.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1095.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1088.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1086.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1082.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1081.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1079.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1079.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1077.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1077.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1067.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1066.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1066.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1064.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1062.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1058.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1058.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1048.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1046.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1046.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1040.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1039.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1034.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1033.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1032.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1032.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1028.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1027.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1024.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1023.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1020.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1017.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1016.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1011.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1010.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 997.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 996.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 996.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 996.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 992.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 991.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 990.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 990.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 989.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 986.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 975.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 974.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 970.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 969.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 969.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 966.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 964.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 961.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 960.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 957.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 956.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 955.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 946.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 938.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 936.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 928.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 922.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 922.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 920.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 920.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 919.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 917.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 916.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 916.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 911.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 910.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 906.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 904.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 902.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 900.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 899.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 896.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 895.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 893.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 892.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 890.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 882.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 881.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 881.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 880.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 880.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 879.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 879.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 877.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 871.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 867.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 867.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 864.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 858.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 855.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 855.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 852.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 849.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 849.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 848.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 846.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 844.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 841.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 840.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 836.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 834.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 832.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 831.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 829.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 825.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 825.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 824.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 823.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 822.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 821.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 817.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 816.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 815.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 811.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 808.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 804.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 799.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 798.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 798.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 794.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 793.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 791.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 782.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 779.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 778.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 768.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 768.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 766.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 765.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 764.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 763.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 762.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 759.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 756.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 755.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 754.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 753.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 753.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 752.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 751.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 744.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 742.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 738.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 737.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 735.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 733.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 732.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 732.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 731.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 731.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 730.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 730.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 729.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 728.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 726.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 722.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 719.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 715.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 714.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 714.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 711.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 711.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 709.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 708.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 706.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 703.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 702.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 700.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 698.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 692.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 688.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 688.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 686.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 686.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 685.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 685.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 682.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 681.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 681.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 679.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 677.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 676.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 671.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 669.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 667.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 660.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 660.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 658.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 656.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 656.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 646.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 641.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 635.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 628.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 627.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 627.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 626.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 626.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 623.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 616.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 614.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 614.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 612.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 612.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 611.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 609.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 606.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 604.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 600.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 595.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 584.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 583.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 577.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 569.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 568.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 562.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 557.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 545.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 533.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 530.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 505.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 493.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 476.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 467.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 455.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 439.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 429.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 415.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 413.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.1
FF:10164-103B2 76 years, female 85.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.1
Pig sample Sample description nTPM
Caudate
nTPM: 6.1
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.9
Sample A Female 8.8
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 5.2

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