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  • TTYH1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:378.1 nTPM
HPA Brain:70.1 nTPM
GTEx:378.1 nTPM
FANTOM5:217.7 Scaled Tags Per Million
Pig:109.2 nTPM
Mouse:202.8 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.1
Sample id Sample description nTPM
Amygdala
nTPM: 66.2
2514 Male, age 75, right hemisphere 81.3
1987 Female, age 91, left hemisphere 69.3
2517 Female, age 94, left hemisphere 67.6
2695 Female, age 67, right hemisphere 66.3
2814 Male, age 76, right hemisphere 46.6
Basal amygdala
nTPM: 68.1
2609 Male, age 75, right hemisphere 112.7
2110 Male, age 80, left hemisphere 74.6
2685 Female, age 94, left hemisphere 64.4
2243 Female, age 91, right hemisphere 55.3
1955 Male, age 76, both hemispheres 51.2
2827 Female, age 67, right hemisphere 50.6
Central amygdala
nTPM: 65.8
2826 Female, age 94, left hemisphere 87.1
2515 Male, age 75, right hemisphere 68.1
1905 Male, age 76, both hemispheres 64.7
2701 Female, age 91, right hemisphere 55.2
2239 Male, age 80, left hemisphere 53.8
Corticomedial amygdala
nTPM: 55.5
2428 Male, age 75, right hemisphere 76.0
2829 Male, age 80, left hemisphere 67.3
2242 Female, age 91, right hemisphere 56.7
2535 Female, age 67, right hemisphere 45.7
2429 Female, age 94, left hemisphere 44.1
2240 Male, age 76, both hemispheres 43.3
Lateral amygdala
nTPM: 70.1
2516 Male, age 75, right hemisphere 105.7
1883 Male, age 76, both hemispheres 68.9
2534 Female, age 94, left hemisphere 66.3
2830 Female, age 67, right hemisphere 65.8
2255 Female, age 91, right hemisphere 60.8
2256 Male, age 80, left hemisphere 53.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

378.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 378.1
Samples: 181

Max nTPM: 1080.1
Min nTPM: 82.1
Std nTPM: 165.8
Median nTPM: 359.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1080.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 943.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 923.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 877.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 773.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 760.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 756.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 724.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 691.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 677.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 674.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 655.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 641.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 637.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 637.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 633.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 630.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 576.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 566.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 563.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 561.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 551.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 549.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 542.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 541.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 531.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 528.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 508.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 508.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 505.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 501.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 500.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 497.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 492.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 487.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 483.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 482.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 479.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 478.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 477.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 476.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 469.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 464.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 457.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 455.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 452.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 450.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 449.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 448.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 447.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 434.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 432.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 430.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 429.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 428.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 423.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 415.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 413.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 411.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 406.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 406.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 402.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 402.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 401.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 401.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 400.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 399.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 397.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 396.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 393.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 390.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 382.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 381.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 379.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 378.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 376.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 375.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 375.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 374.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 374.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 371.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 369.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 369.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 368.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 366.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 365.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 363.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 362.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 361.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 359.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 358.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 358.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 357.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 356.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 356.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 355.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 351.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 347.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 344.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 343.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 340.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 339.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 338.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 337.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 336.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 335.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 333.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 331.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 329.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 328.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 326.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 324.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 317.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 315.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 314.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 312.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 310.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 310.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 309.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 308.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 299.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 299.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 295.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 294.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 290.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 284.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 278.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 277.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 276.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 276.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 274.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 274.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 273.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 273.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 273.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 268.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 259.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 253.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 252.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 249.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 245.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 242.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 241.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 241.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 241.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 238.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 234.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 229.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 227.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 226.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 224.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 221.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 220.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 220.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 215.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 214.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 211.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 206.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 204.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 202.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 199.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 198.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 194.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 172.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 172.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 170.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 167.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 150.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 147.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 143.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 143.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 137.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 122.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 120.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 217.7
FF:10151-102I7 76 years, female 217.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.2
Pig sample Sample description nTPM
Amygdala
nTPM: 109.3
Samples: 4

Max nTPM: 126.1
Min nTPM: 92.8
Sample A Female 102.5
Sample B Female 115.7
Sample C Male 126.1
Sample D Male 92.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 202.8
Samples: 4

Max nTPM: 242.3
Min nTPM: 178.3
Sample A Male 178.3
Sample B Male 188.6
Sample C Female 242.3
Sample D Female 201.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.8
70919830 Antisense, RP_050713_02_B05, Mouse strain C57BL/6J (56 days, male) 7.8

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