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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:251.4 nTPM
HPA:251.4 nTPM
GTEx:172.6 nTPM
FANTOM5:412.7 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011101Antibody CAB018969
Glandular cells MediumHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.4
overview
Male, age 65
Small intestine sample 232
nTPM: 254.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 263.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 243.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 244.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 172.6
Samples: 207

Max nTPM: 801.2
Min nTPM: 4.1
Std nTPM: 157.0
Median nTPM: 133.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 801.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 622.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 561.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 530.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 518.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 487.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 483.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 470.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 463.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 456.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 452.3
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 450.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 446.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 444.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 438.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 430.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 423.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 409.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 405.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 404.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 401.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 395.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 394.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 390.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 389.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 387.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 382.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 378.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 378.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 376.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 376.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 371.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 368.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 359.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 355.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 354.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 351.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 350.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 349.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 340.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 334.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 322.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 320.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 316.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 309.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 307.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 295.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 294.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 291.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 290.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 285.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 284.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 264.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 262.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 261.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 259.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 258.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 257.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 255.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 250.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 248.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 247.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 246.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 243.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 239.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 238.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 235.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 233.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 232.3
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 226.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 225.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 223.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 214.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 212.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 206.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 205.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 203.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 199.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 199.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 197.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 192.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 191.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 180.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 178.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 177.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 175.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 174.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 173.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 173.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 171.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 169.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 168.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 164.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 162.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 161.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 157.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 153.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 146.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 142.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 141.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 139.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 134.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 133.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 133.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 132.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 126.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 125.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 123.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 118.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 114.9
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 114.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 110.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 105.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 103.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 103.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 101.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 97.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 91.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 89.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 86.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 86.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 82.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 82.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 80.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 80.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 76.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 70.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 69.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 63.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 61.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 60.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 60.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 60.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 59.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 55.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 54.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 53.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 52.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 51.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 50.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 50.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 48.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 48.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 47.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 47.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 44.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 43.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 43.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 41.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 40.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 39.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 38.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 38.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 37.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 37.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 35.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 34.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 33.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 31.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 31.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 29.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 28.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 27.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 26.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 25.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 24.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 24.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 23.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 23.6
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 20.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 20.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 18.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 18.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 17.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 17.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 16.3
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 16.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 12.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 11.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 10.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 10.2
GTEX-1192X-2526-SM-59868 50-59 years, male 9.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 9.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 9.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 9.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.6
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 7.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 7.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 6.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 6.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 6.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 6.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 6.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 6.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 5.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 5.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 5.2
GTEX-178AV-1226-SM-GOR11 40-49 years, male 4.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

412.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 412.7
FF:10024-101D6 15,40,85 years, mixed 412.7

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