HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:119.0 nTPM
HPA Brain:131.9 nTPM
GTEx:119.0 nTPM
FANTOM5:60.1 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:53.3 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040906Antibody HPA041313
Glial cells Not detectedLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 131.9
Sample id Sample description nTPM
Hippocampus
nTPM: 129.6
1898 Male, age 80, left hemisphere 142.9
2621 Female, age 67, right hemisphere 141.8
2529 Female, age 94, left hemisphere 133.1
2148 Female, age 91, left hemisphere 130.8
1855 Male, age 76, left hemisphere 124.4
1911 Female, age 85, right hemisphere 104.3
Dentate gyrus
nTPM: 129.5
2530 Female, age 94, left hemisphere 190.8
1927 Female, age 91, both hemispheres 138.1
2531 Female, age 67, both hemispheres 130.4
2010 Male, age 76, both hemispheres 124.0
2528 Male, age 74, both hemispheres 97.3
2246 Female, age 85, both hemispheres 96.6
Entorhinal gyrus
nTPM: 111.5
2764 Male, age 80, right hemisphere 122.3
1938 Female, age 85, left hemisphere 114.3
1787 Male, age 76, left hemisphere 113.3
2613 Female, age 94, left hemisphere 110.9
2686 Male, age 75, right hemisphere 110.3
2117 Female, age 91, right hemisphere 97.9
Hippocampus, CA1
nTPM: 123.2
2749 Male, age 80, left hemisphere 177.4
1873 Female, age 85, both hemispheres 129.6
2045 Male, age 76, both hemispheres 115.2
2527 Male, age 74, both hemispheres 107.3
2082 Female, age 91, right hemisphere 86.6
Hippocampus, CA2
nTPM: 122.1
1963 Male, age 80, left hemisphere 180.1
2437 Female, age 94, left hemisphere 152.2
1892 Male, age 76, both hemispheres 127.6
2113 Female, age 91, right hemisphere 94.1
1940 Female, age 85, left hemisphere 92.3
2249 Male, age 74, both hemispheres 86.2
Hippocampus, CA3
nTPM: 131.9
2620 Female, age 94, left hemisphere 177.0
2861 Female, age 67, both hemispheres 161.3
2137 Male, age 80, left hemisphere 136.3
1867 Male, age 76, both hemispheres 113.0
2436 Male, age 74, both hemispheres 111.2
1891 Female, age 85, both hemispheres 92.5
Parahippocampal cortex
nTPM: 104.3
2245 Female, age 91, both hemispheres 132.5
2622 Female, age 67, right hemisphere 112.0
1933 Female, age 85, both hemispheres 105.1
1850 Male, age 80, both hemispheres 104.6
1990 Female, age 91, right hemisphere 102.9
2532 Female, age 72, left hemisphere 101.1
2692 Male, age 74, both hemispheres 100.4
2250 Female, age 67, right hemisphere 100.1
2018 Male, age 76, both hemispheres 94.7
2693 Female, age 94, both hemispheres 89.0
Perirhinal gyrus
nTPM: 109.7
1847 Female, age 91, left hemisphere 126.1
1794 Male, age 80, right hemisphere 123.6
2521 Female, age 94, right hemisphere 104.3
1841 Female, age 85, right hemisphere 98.1
2848 Male, age 76, right hemisphere 96.5
Subiculum
nTPM: 101.9
2438 Female, age 94, left hemisphere 111.9
1977 Female, age 85, both hemispheres 106.0
1901 Male, age 80, both hemispheres 104.2
2619 Male, age 74, both hemispheres 103.8
2729 Female, age 91, right hemisphere 94.5
2042 Male, age 76, both hemispheres 91.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 119.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 119.0
Samples: 255

Max nTPM: 211.9
Min nTPM: 37.5
Std nTPM: 35.9
Median nTPM: 118.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 211.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 208.1
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 206.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 202.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 202.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 197.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 196.1
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 195.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 190.1
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 188.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 186.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.1
FF:10169-103B7 60 years, female 62.3
FF:10153-102I9 76 years, female 58.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.1
Pig sample Sample description nTPM
Subiculum
nTPM: 33.0
Samples: 4

Max nTPM: 43.6
Min nTPM: 27.6
Sample A Female 43.6
Sample B Female 31.5
Sample C Male 29.2
Sample D Male 27.6
Dorsal hippocampus
nTPM: 39.1
Samples: 4

Max nTPM: 50.7
Min nTPM: 28.5
Sample A Female 50.7
Sample B Female 37.5
Sample C Male 39.5
Sample D Male 28.5
Entorhinal cortex
nTPM: 36.9
Samples: 4

Max nTPM: 42.6
Min nTPM: 30.4
Sample A Female 34.9
Sample B Female 42.6
Sample C Male 39.8
Sample D Male 30.4
Ventral hippocampus
nTPM: 36.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 27.0
Sample A Female 34.7
Sample B Female 27.0
Sample C Male 42.2
Sample D Male 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 53.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.3
Samples: 4

Max nTPM: 55.0
Min nTPM: 49.5
Sample A Male 49.5
Sample B Male 55.0
Sample C Female 50.3
Sample D Female 50.2
Hippocampal formation
nTPM: 53.4
Samples: 4

Max nTPM: 59.2
Min nTPM: 48.2
Sample A Male 59.2
Sample B Male 48.2
Sample C Female 52.7
Sample D Female 53.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
69015440 Antisense, RP_050315_01_A04, Mouse strain C57BL/6J (56 days, male) 4.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo