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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:20.1 nTPM
HPA Brain:38.6 nTPM
GTEx:20.1 nTPM
FANTOM5:100.2 Scaled Tags Per Million
Pig:47.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 24.7
1981 Female, age 72, midline 26.4
2048 Male, age 55, midline 26.0
2565 Male, age 75, midline 25.7
2194 Female, age 79, both hemispheres 24.5
2816 Male, age 47, midline 20.8
Cervical spinal cord, dorsal horn
nTPM: 38.6
2721 Male, age 90, both hemispheres 108.1
2173 Female, age 72, unknown 30.5
2069 Male, age 47, both hemispheres 26.7
2296 Male, age 66, both hemispheres 25.2
1877 Male, age 55, unknown 21.3
2297 Male, age 75, both hemispheres 20.0
Cervical spinal cord, ventral horn
nTPM: 21.0
2068 Male, age 55, unknown 26.5
2480 Male, age 75, both hemispheres 23.3
2098 Female, age 72, unknown 22.9
2820 Female, age 79, both hemispheres 20.6
2295 Male, age 66, both hemispheres 20.3
2809 Male, age 90, both hemispheres 12.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 20.1
Samples: 204

Max nTPM: 30.0
Min nTPM: 11.3
Std nTPM: 3.3
Median nTPM: 20.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 30.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 27.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 27.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 27.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 26.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 26.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 26.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 25.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 25.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 25.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 25.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 25.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 25.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 25.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 25.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 25.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 25.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 25.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 24.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 24.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 24.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 24.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 24.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 23.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 23.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 23.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 23.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 23.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 23.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 23.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 23.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 23.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 23.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 23.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 23.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 23.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 23.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 23.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 23.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 23.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 22.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 22.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 22.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 22.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 22.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 22.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 22.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 22.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 22.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 22.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 22.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 22.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 22.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 22.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 22.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 22.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 22.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 22.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 22.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 22.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 21.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 21.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 21.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 21.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 21.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 21.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 21.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 21.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 21.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 21.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 21.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 21.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 21.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 21.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 21.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 21.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 21.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 21.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 21.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 21.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 21.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 21.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 21.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 20.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 20.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 20.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 20.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 20.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 20.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 20.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 20.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 20.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 20.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 20.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 20.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 20.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 20.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 20.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 20.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 20.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 20.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 20.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 20.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 20.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 20.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 20.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 20.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 20.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 19.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 19.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 19.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 19.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 19.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 19.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 19.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 19.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 19.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 19.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 19.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 19.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 19.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 19.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 19.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 19.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 19.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 19.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 18.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 18.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 18.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 18.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 18.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 18.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 18.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 18.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 18.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 18.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 18.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 18.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 18.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 18.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 18.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 18.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 18.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 18.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 18.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 18.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 18.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 18.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 18.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 17.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 17.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 17.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 17.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 17.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 17.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 17.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 17.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 17.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 17.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 17.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 17.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 17.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 17.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 16.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 16.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 16.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 16.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 16.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 16.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 16.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 16.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 16.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 16.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 16.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 16.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 16.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 16.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 16.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 15.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 15.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 15.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 15.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 15.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 15.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 15.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 15.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 15.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 15.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 15.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 14.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 14.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 14.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 14.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 14.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 13.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 13.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 13.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 12.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 11.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.2
FF:10181-103D1 60 years, female 140.7
FF:10159-103A6 76 years, female 59.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 47.7
Samples: 4

Max nTPM: 55.4
Min nTPM: 37.7
Sample A Female 54.9
Sample B Female 37.7
Sample C Male 42.6
Sample D Male 55.4
Ventral spinal cord
nTPM: 42.8
Samples: 4

Max nTPM: 46.0
Min nTPM: 39.4
Sample A Female 43.9
Sample B Female 42.0
Sample C Male 46.0
Sample D Male 39.4

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