HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:41.9 nTPM
HPA Brain:35.1 nTPM
GTEx:41.9 nTPM
FANTOM5:78.4 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:25.6 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041841Antibody HPA068631Antibody CAB019935
Glial cells LowNot detectedNot detected
Neuronal cells LowMediumLow






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 35.1
Sample id Sample description nTPM
Hippocampus
nTPM: 34.2
2621 Female, age 67, right hemisphere 37.5
1898 Male, age 80, left hemisphere 35.5
2148 Female, age 91, left hemisphere 34.3
2529 Female, age 94, left hemisphere 33.3
1855 Male, age 76, left hemisphere 32.8
1911 Female, age 85, right hemisphere 31.9
Dentate gyrus
nTPM: 35.1
2530 Female, age 94, left hemisphere 49.4
1927 Female, age 91, both hemispheres 33.9
2528 Male, age 74, both hemispheres 33.8
2531 Female, age 67, both hemispheres 32.7
2010 Male, age 76, both hemispheres 32.4
2246 Female, age 85, both hemispheres 28.6
Entorhinal gyrus
nTPM: 31.1
2613 Female, age 94, left hemisphere 36.8
2764 Male, age 80, right hemisphere 34.3
1787 Male, age 76, left hemisphere 33.3
1938 Female, age 85, left hemisphere 32.2
2686 Male, age 75, right hemisphere 25.2
2117 Female, age 91, right hemisphere 24.7
Hippocampus, CA1
nTPM: 33.0
2749 Male, age 80, left hemisphere 45.7
2527 Male, age 74, both hemispheres 33.7
1873 Female, age 85, both hemispheres 32.6
2082 Female, age 91, right hemisphere 26.9
2045 Male, age 76, both hemispheres 26.1
Hippocampus, CA2
nTPM: 35.1
2437 Female, age 94, left hemisphere 43.1
1892 Male, age 76, both hemispheres 39.7
1963 Male, age 80, left hemisphere 39.6
2249 Male, age 74, both hemispheres 30.9
1940 Female, age 85, left hemisphere 29.8
2113 Female, age 91, right hemisphere 27.7
Hippocampus, CA3
nTPM: 33.7
2861 Female, age 67, both hemispheres 45.0
2137 Male, age 80, left hemisphere 36.3
2436 Male, age 74, both hemispheres 32.2
2620 Female, age 94, left hemisphere 31.2
1867 Male, age 76, both hemispheres 30.5
1891 Female, age 85, both hemispheres 26.8
Parahippocampal cortex
nTPM: 30.5
2622 Female, age 67, right hemisphere 38.0
2245 Female, age 91, both hemispheres 35.3
2532 Female, age 72, left hemisphere 32.2
1850 Male, age 80, both hemispheres 31.8
1933 Female, age 85, both hemispheres 31.8
1990 Female, age 91, right hemisphere 29.3
2250 Female, age 67, right hemisphere 29.3
2692 Male, age 74, both hemispheres 28.7
2693 Female, age 94, both hemispheres 24.9
2018 Male, age 76, both hemispheres 23.8
Perirhinal gyrus
nTPM: 32.0
1794 Male, age 80, right hemisphere 39.0
1847 Female, age 91, left hemisphere 31.2
1841 Female, age 85, right hemisphere 30.4
2848 Male, age 76, right hemisphere 29.7
2521 Female, age 94, right hemisphere 29.6
Subiculum
nTPM: 28.6
2438 Female, age 94, left hemisphere 32.6
2619 Male, age 74, both hemispheres 31.3
2729 Female, age 91, right hemisphere 28.1
1901 Male, age 80, both hemispheres 27.7
1977 Female, age 85, both hemispheres 27.1
2042 Male, age 76, both hemispheres 24.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 41.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.9
Samples: 255

Max nTPM: 87.7
Min nTPM: 14.8
Std nTPM: 12.2
Median nTPM: 40.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 87.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 80.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 79.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 75.8
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 75.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 69.6
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 67.9
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 66.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 65.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 65.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 65.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.4
FF:10169-103B7 60 years, female 102.8
FF:10153-102I9 76 years, female 54.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 10.4
Pig sample Sample description nTPM
Subiculum
nTPM: 9.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.0
Sample A Female 10.6
Sample B Female 8.0
Sample C Male 9.1
Sample D Male 8.4
Dorsal hippocampus
nTPM: 9.5
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.7
Sample A Female 10.6
Sample B Female 9.5
Sample C Male 9.3
Sample D Male 8.7
Entorhinal cortex
nTPM: 9.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.1
Sample A Female 10.0
Sample B Female 9.1
Sample C Male 10.0
Sample D Male 9.2
Ventral hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.8
Sample A Female 10.5
Sample B Female 7.8
Sample C Male 12.6
Sample D Male 10.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 25.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.6
Samples: 4

Max nTPM: 26.9
Min nTPM: 24.7
Sample A Male 24.7
Sample B Male 25.7
Sample C Female 25.2
Sample D Female 26.9
Hippocampal formation
nTPM: 25.2
Samples: 4

Max nTPM: 29.6
Min nTPM: 21.5
Sample A Male 29.6
Sample B Male 23.4
Sample C Female 21.5
Sample D Female 26.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
69059955 Antisense, RP_050317_04_G03, Mouse strain C57BL/6J (56 days, male) 1.9

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