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  • ECI1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.7 nTPM
HPA Brain:32.7 nTPM
GTEx:55.7 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:25.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.7
Sample id Sample description nTPM
Amygdala
nTPM: 32.7
2695 Female, age 67, right hemisphere 40.4
2814 Male, age 76, right hemisphere 38.7
1987 Female, age 91, left hemisphere 29.7
2517 Female, age 94, left hemisphere 29.6
2514 Male, age 75, right hemisphere 24.8
Basal amygdala
nTPM: 25.7
2609 Male, age 75, right hemisphere 34.2
1955 Male, age 76, both hemispheres 29.7
2110 Male, age 80, left hemisphere 26.6
2827 Female, age 67, right hemisphere 23.1
2685 Female, age 94, left hemisphere 22.5
2243 Female, age 91, right hemisphere 17.9
Central amygdala
nTPM: 29.1
1905 Male, age 76, both hemispheres 40.6
2826 Female, age 94, left hemisphere 32.0
2515 Male, age 75, right hemisphere 30.9
2239 Male, age 80, left hemisphere 22.3
2701 Female, age 91, right hemisphere 19.5
Corticomedial amygdala
nTPM: 21.7
2428 Male, age 75, right hemisphere 30.9
2535 Female, age 67, right hemisphere 24.0
2829 Male, age 80, left hemisphere 23.8
2429 Female, age 94, left hemisphere 19.5
2240 Male, age 76, both hemispheres 17.0
2242 Female, age 91, right hemisphere 15.1
Lateral amygdala
nTPM: 30.4
2516 Male, age 75, right hemisphere 37.0
1883 Male, age 76, both hemispheres 32.9
2830 Female, age 67, right hemisphere 31.8
2534 Female, age 94, left hemisphere 29.7
2256 Male, age 80, left hemisphere 27.6
2255 Female, age 91, right hemisphere 23.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.7
Samples: 181

Max nTPM: 147.1
Min nTPM: 25.7
Std nTPM: 17.4
Median nTPM: 51.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 147.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 114.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 105.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 103.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 96.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 95.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 91.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 88.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 86.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 85.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 83.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 81.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 80.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 80.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 79.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 78.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 77.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 77.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 77.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 76.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 76.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 75.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 74.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 73.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 73.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 72.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 72.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 72.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 71.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 70.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 68.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 66.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 66.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 65.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 64.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 64.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 64.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 64.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 63.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 63.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 63.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 62.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 62.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 61.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 61.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 61.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 60.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 60.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 60.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 59.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 59.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 59.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 59.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 58.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 58.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 57.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 57.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 57.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 57.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 56.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 55.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 55.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 55.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 55.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 54.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 54.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 53.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 53.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 51.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 51.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 51.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 51.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 51.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 51.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 51.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 50.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 50.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 50.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 50.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 50.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 49.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 49.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 49.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 48.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 47.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 47.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 47.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 47.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 46.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 46.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 46.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 46.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 45.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 45.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 45.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 45.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 45.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 45.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 45.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 44.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 44.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 44.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 44.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 44.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 44.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 44.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 43.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 43.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 43.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 42.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 42.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 41.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 41.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 41.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 41.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 40.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 40.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 40.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 39.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 39.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 39.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 38.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 38.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 37.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 37.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 37.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 36.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 36.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 34.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 34.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 34.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 33.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 31.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 31.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 31.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 30.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 29.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 28.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 27.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 25.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.9
FF:10151-102I7 76 years, female 29.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.9
Pig sample Sample description nTPM
Amygdala
nTPM: 20.9
Samples: 4

Max nTPM: 25.9
Min nTPM: 14.6
Sample A Female 20.5
Sample B Female 25.9
Sample C Male 22.5
Sample D Male 14.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 25.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 22.2
Sample A Male 22.2
Sample B Male 22.6
Sample C Female 28.4
Sample D Female 28.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68498741 Antisense, RP_050113_02_D04, Mouse strain C57BL/6J (56 days, male) 0.0

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