MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:82.8 nTPM
GTEx:28.1 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:78.7 nTPM
Mouse:129.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.8
1827 Male, age 72, unknown 78.5
2586 Male, age 75, left hemisphere 77.2
2828 Female, age 72, unknown 74.9
2411 Female, age 72, unknown 69.0
1870 Female, age 42, unknown 67.0
2019 Male, age 18, unknown 64.9
1833 Male, age 53, unknown 62.8
2219 Male, age 76, both hemispheres 57.3
1830 Male, age 51, unknown 54.7
2666 Male, age 74, left hemisphere 51.7
Dorsal raphe nucleus
nTPM: 82.8
2298 Female, age 72, unknown 116.0
2047 Male, age 72, unknown 81.0
2016 Female, age 72, unknown 78.3
1828 Male, age 53, unknown 72.6
2750 Male, age 76, both hemispheres 66.1
Inferior colliculus
nTPM: 69.0
2097 Female, age 72, unknown 81.0
1848 Female, age 42, unknown 66.8
1890 Male, age 53, unknown 66.8
2849 Male, age 72, unknown 61.4
Median raphe nucleus
nTPM: 71.4
2220 Male, age 76, midline 71.4
Periaquaductal grey, anterior
nTPM: 76.1
1947 Male, age 18, unknown 80.2
1795 Male, age 51, unknown 78.4
2502 Female, age 75, unknown 69.8
Periaquaductal grey, dorsal
nTPM: 70.8
1840 Male, age 53, unknown 79.2
2850 Male, age 76, both hemispheres 75.3
1831 Male, age 72, unknown 66.4
2464 Female, age 72, unknown 62.2
Periaquaductal grey, lateral
nTPM: 77.3
2272 Male, age 74, both hemispheres 95.6
2053 Male, age 18, unknown 69.5
2140 Male, age 76, both hemispheres 66.9
Pretectal area
nTPM: 76.5
2273 Male, age 74, both hemispheres 99.4
1816 Male, age 51, unknown 83.0
1817 Female, age 42, unknown 80.6
2667 Female, age 75, unknown 80.3
2224 Female, age 72, unknown 79.2
2007 Male, age 72, unknown 78.8
1944 Female, age 72, unknown 75.3
1815 Male, age 53, unknown 72.3
2825 Male, age 18, unknown 71.3
2407 Male, age 75, both hemispheres 60.9
2316 Male, age 76, right hemisphere 60.4
Red nucleus
nTPM: 62.7
1821 Female, age 72, unknown 80.6
2725 Female, age 75, unknown 68.5
2503 Female, age 72, unknown 66.8
1954 Female, age 42, unknown 65.8
1904 Male, age 53, unknown 64.5
2769 Male, age 72, unknown 64.4
2785 Male, age 18, unknown 63.8
1865 Male, age 51, unknown 63.3
2227 Male, age 72, unknown 63.2
2584 Male, age 75, left hemisphere 54.3
2588 Male, age 74, left hemisphere 51.7
2823 Male, age 76, right hemisphere 45.7
Substantia nigra
nTPM: 76.4
1916 Female, age 42, unknown 96.7
1851 Male, age 51, unknown 86.1
1941 Male, age 53, unknown 83.4
1889 Female, age 72, unknown 76.4
2241 Male, age 72, unknown 75.6
2590 Female, age 75, unknown 72.6
2409 Female, age 72, unknown 72.0
2583 Male, age 75, right hemisphere 67.6
2699 Male, age 18, unknown 67.4
2665 Male, age 74, both hemispheres 66.2
Superior colliculus
nTPM: 68.6
2261 Male, age 18, unknown 83.0
2587 Male, age 74, left hemisphere 79.4
2664 Male, age 75, both hemispheres 72.6
1796 Male, age 53, unknown 71.6
2087 Female, age 72, unknown 68.9
2668 Female, age 75, unknown 66.5
1839 Male, age 51, unknown 65.5
1995 Male, age 72, unknown 61.6
1913 Female, age 42, unknown 59.6
1895 Male, age 76, right hemisphere 57.4
Ventral tegmental area
nTPM: 73.7
1915 Female, age 42, unknown 86.3
2410 Female, age 72, unknown 84.4
1942 Male, age 51, unknown 69.6
2218 Male, age 76, both hemispheres 68.2
2021 Male, age 53, unknown 68.1
2223 Female, age 72, unknown 65.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 183

Max nTPM: 67.5
Min nTPM: 6.4
Std nTPM: 10.8
Median nTPM: 26.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 58.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 56.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 50.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 48.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 45.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 45.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.1
Samples: 4

Max nTPM: 88.7
Min nTPM: 65.6
Sample A Female 88.7
Sample B Female 65.6
Sample C Male 86.3
Sample D Male 67.9
Midbrain
nTPM: 78.7
Samples: 4

Max nTPM: 93.8
Min nTPM: 61.0
Sample A Female 93.8
Sample B Female 61.0
Sample C Male 92.5
Sample D Male 67.5
Periaqueductal gray
nTPM: 61.2
Samples: 3

Max nTPM: 69.3
Min nTPM: 54.9
Sample B Female 59.5
Sample C Male 69.3
Sample D Male 54.9
Superior colliculi
nTPM: 78.0
Samples: 4

Max nTPM: 81.4
Min nTPM: 74.6
Sample A Female 80.1
Sample B Female 74.6
Sample C Male 81.4
Sample D Male 75.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 129.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.3
Samples: 4

Max nTPM: 139.0
Min nTPM: 123.1
Sample A Male 123.1
Sample B Male 127.7
Sample C Female 139.0
Sample D Female 127.3

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