MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:61.6 nTPM
GTEx:19.2 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2219 Male, age 76, both hemispheres 31.3
2586 Male, age 75, left hemisphere 26.3
2828 Female, age 72, unknown 24.2
1827 Male, age 72, unknown 23.3
1870 Female, age 42, unknown 17.3
1833 Male, age 53, unknown 17.2
2019 Male, age 18, unknown 14.7
1830 Male, age 51, unknown 14.4
2411 Female, age 72, unknown 14.1
2666 Male, age 74, left hemisphere 12.6
Dorsal raphe nucleus
nTPM: 33.9
2016 Female, age 72, unknown 57.0
2298 Female, age 72, unknown 36.2
2047 Male, age 72, unknown 27.9
1828 Male, age 53, unknown 26.7
2750 Male, age 76, both hemispheres 21.5
Inferior colliculus
nTPM: 15.4
1890 Male, age 53, unknown 18.1
2849 Male, age 72, unknown 15.8
1848 Female, age 42, unknown 15.1
2097 Female, age 72, unknown 12.5
Median raphe nucleus
nTPM: 32.4
2220 Male, age 76, midline 32.4
Periaquaductal grey, anterior
nTPM: 28.1
1795 Male, age 51, unknown 44.3
1947 Male, age 18, unknown 20.2
2502 Female, age 75, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 33.5
2850 Male, age 76, both hemispheres 48.7
1840 Male, age 53, unknown 34.9
1831 Male, age 72, unknown 34.6
2464 Female, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 61.6
2272 Male, age 74, both hemispheres 115.6
2140 Male, age 76, both hemispheres 35.8
2053 Male, age 18, unknown 33.3
Pretectal area
nTPM: 23.7
2273 Male, age 74, both hemispheres 70.3
2825 Male, age 18, unknown 27.3
2224 Female, age 72, unknown 26.8
2667 Female, age 75, unknown 20.1
2316 Male, age 76, right hemisphere 18.5
2407 Male, age 75, both hemispheres 18.4
1816 Male, age 51, unknown 18.1
1944 Female, age 72, unknown 17.1
1815 Male, age 53, unknown 16.4
2007 Male, age 72, unknown 16.1
1817 Female, age 42, unknown 11.1
Red nucleus
nTPM: 13.7
2584 Male, age 75, left hemisphere 18.7
2725 Female, age 75, unknown 17.4
2503 Female, age 72, unknown 15.5
2785 Male, age 18, unknown 14.1
2227 Male, age 72, unknown 14.0
2588 Male, age 74, left hemisphere 13.9
1904 Male, age 53, unknown 13.8
1821 Female, age 72, unknown 12.6
2769 Male, age 72, unknown 12.6
2823 Male, age 76, right hemisphere 10.7
1954 Female, age 42, unknown 10.6
1865 Male, age 51, unknown 10.1
Substantia nigra
nTPM: 17.0
2699 Male, age 18, unknown 23.7
1916 Female, age 42, unknown 21.3
2665 Male, age 74, both hemispheres 18.4
2241 Male, age 72, unknown 16.9
2583 Male, age 75, right hemisphere 16.7
2590 Female, age 75, unknown 16.6
1851 Male, age 51, unknown 16.3
2409 Female, age 72, unknown 16.1
1889 Female, age 72, unknown 12.8
1941 Male, age 53, unknown 11.2
Superior colliculus
nTPM: 22.2
2261 Male, age 18, unknown 28.9
1796 Male, age 53, unknown 26.8
2587 Male, age 74, left hemisphere 26.4
2668 Female, age 75, unknown 23.4
1995 Male, age 72, unknown 23.0
2664 Male, age 75, both hemispheres 22.0
1839 Male, age 51, unknown 21.0
1913 Female, age 42, unknown 20.1
2087 Female, age 72, unknown 15.7
1895 Male, age 76, right hemisphere 14.8
Ventral tegmental area
nTPM: 21.7
2021 Male, age 53, unknown 30.6
1942 Male, age 51, unknown 25.8
2218 Male, age 76, both hemispheres 22.4
1915 Female, age 42, unknown 19.9
2223 Female, age 72, unknown 17.0
2410 Female, age 72, unknown 14.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 183

Max nTPM: 61.6
Min nTPM: 4.6
Std nTPM: 8.1
Median nTPM: 17.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 61.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 61.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 51.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 41.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 38.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 37.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 36.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 35.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 33.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 31.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.8
FF:10158-103A5 76 years, female 5.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.1
Sample A Female 13.5
Sample B Female 13.8
Sample C Male 13.0
Sample D Male 11.1
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 6.8
Sample A Female 16.6
Sample B Female 6.8
Sample C Male 8.2
Sample D Male 8.1
Periaqueductal gray
nTPM: 9.6
Samples: 3

Max nTPM: 11.0
Min nTPM: 8.4
Sample B Female 8.4
Sample C Male 11.0
Sample D Male 9.4
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 14.9
Min nTPM: 9.0
Sample A Female 12.4
Sample B Female 14.9
Sample C Male 9.5
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.4
Sample A Male 5.6
Sample B Male 4.4
Sample C Female 4.9
Sample D Female 5.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73817984 Antisense, RP_051214_01_A09, Mouse strain C57BL/6J (56 days, male) 0.1
686197 Antisense, RP_040916_01_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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