MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:46.5 nTPM
GTEx:25.5 nTPM
FANTOM5:104.7 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:30.1 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
1870 Female, age 42, unknown 49.2
2411 Female, age 72, unknown 47.8
2586 Male, age 75, left hemisphere 45.4
1830 Male, age 51, unknown 43.2
1833 Male, age 53, unknown 42.2
2019 Male, age 18, unknown 41.5
2666 Male, age 74, left hemisphere 38.5
2828 Female, age 72, unknown 34.3
1827 Male, age 72, unknown 33.7
2219 Male, age 76, both hemispheres 32.4
Dorsal raphe nucleus
nTPM: 34.9
2750 Male, age 76, both hemispheres 42.7
2016 Female, age 72, unknown 37.2
2298 Female, age 72, unknown 33.5
1828 Male, age 53, unknown 33.2
2047 Male, age 72, unknown 27.7
Inferior colliculus
nTPM: 38.6
2097 Female, age 72, unknown 39.9
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 39.0
2849 Male, age 72, unknown 36.2
Median raphe nucleus
nTPM: 32.7
2220 Male, age 76, midline 32.7
Periaquaductal grey, anterior
nTPM: 34.2
2502 Female, age 75, unknown 38.6
1947 Male, age 18, unknown 33.0
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 33.3
2464 Female, age 72, unknown 34.9
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 32.8
2850 Male, age 76, both hemispheres 31.0
Periaquaductal grey, lateral
nTPM: 30.9
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 28.5
2272 Male, age 74, both hemispheres 28.0
Pretectal area
nTPM: 34.2
1815 Male, age 53, unknown 41.7
2007 Male, age 72, unknown 39.5
2407 Male, age 75, both hemispheres 36.4
1817 Female, age 42, unknown 35.6
2316 Male, age 76, right hemisphere 34.4
2224 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 32.4
2667 Female, age 75, unknown 31.0
1816 Male, age 51, unknown 30.9
2273 Male, age 74, both hemispheres 30.5
1944 Female, age 72, unknown 29.4
Red nucleus
nTPM: 46.5
1821 Female, age 72, unknown 54.5
1865 Male, age 51, unknown 51.1
1904 Male, age 53, unknown 50.6
2588 Male, age 74, left hemisphere 47.0
2503 Female, age 72, unknown 46.7
2227 Male, age 72, unknown 46.0
2769 Male, age 72, unknown 45.5
1954 Female, age 42, unknown 44.2
2785 Male, age 18, unknown 44.2
2584 Male, age 75, left hemisphere 42.9
2725 Female, age 75, unknown 42.9
2823 Male, age 76, right hemisphere 42.1
Substantia nigra
nTPM: 37.3
2583 Male, age 75, right hemisphere 46.0
2241 Male, age 72, unknown 42.6
1889 Female, age 72, unknown 39.7
2699 Male, age 18, unknown 37.8
2665 Male, age 74, both hemispheres 37.2
1851 Male, age 51, unknown 36.8
2409 Female, age 72, unknown 36.5
2590 Female, age 75, unknown 35.6
1916 Female, age 42, unknown 30.9
1941 Male, age 53, unknown 30.0
Superior colliculus
nTPM: 39.8
1913 Female, age 42, unknown 52.4
1995 Male, age 72, unknown 46.5
2587 Male, age 74, left hemisphere 44.0
2668 Female, age 75, unknown 42.6
1895 Male, age 76, right hemisphere 40.2
1839 Male, age 51, unknown 39.4
2261 Male, age 18, unknown 36.2
1796 Male, age 53, unknown 35.6
2664 Male, age 75, both hemispheres 33.0
2087 Female, age 72, unknown 28.4
Ventral tegmental area
nTPM: 37.1
2223 Female, age 72, unknown 42.0
2410 Female, age 72, unknown 40.0
1942 Male, age 51, unknown 37.9
2021 Male, age 53, unknown 37.1
2218 Male, age 76, both hemispheres 33.8
1915 Female, age 42, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 183

Max nTPM: 52.6
Min nTPM: 12.3
Std nTPM: 8.0
Median nTPM: 23.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 52.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 48.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 45.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 44.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 43.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 40.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 40.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.7
FF:10158-103A5 76 years, female 104.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.5
Samples: 4

Max nTPM: 58.1
Min nTPM: 42.3
Sample A Female 58.1
Sample B Female 46.6
Sample C Male 42.3
Sample D Male 50.8
Midbrain
nTPM: 56.2
Samples: 4

Max nTPM: 80.5
Min nTPM: 45.4
Sample A Female 80.5
Sample B Female 53.2
Sample C Male 45.4
Sample D Male 45.6
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 45.5
Min nTPM: 41.5
Sample B Female 41.5
Sample C Male 45.5
Sample D Male 43.1
Superior colliculi
nTPM: 50.2
Samples: 4

Max nTPM: 59.9
Min nTPM: 44.4
Sample A Female 59.9
Sample B Female 44.4
Sample C Male 46.8
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 32.0
Min nTPM: 27.6
Sample A Male 31.3
Sample B Male 29.4
Sample C Female 32.0
Sample D Female 27.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68667934 Antisense, RP_050203_01_B03, Mouse strain C57BL/6J (56 days, male) 0.5

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