MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:8.0 nTPM
GTEx:21.1 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:1.4 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.8
2019 Male, age 18, unknown 10.4
2586 Male, age 75, left hemisphere 8.6
2828 Female, age 72, unknown 7.9
1870 Female, age 42, unknown 7.2
2666 Male, age 74, left hemisphere 7.2
1827 Male, age 72, unknown 6.9
1830 Male, age 51, unknown 6.8
1833 Male, age 53, unknown 5.7
2411 Female, age 72, unknown 5.5
2219 Male, age 76, both hemispheres 2.1
Dorsal raphe nucleus
nTPM: 8.0
1828 Male, age 53, unknown 10.0
2750 Male, age 76, both hemispheres 8.2
2047 Male, age 72, unknown 7.5
2016 Female, age 72, unknown 7.4
2298 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 5.3
2097 Female, age 72, unknown 7.3
1848 Female, age 42, unknown 5.7
1890 Male, age 53, unknown 4.5
2849 Male, age 72, unknown 3.6
Median raphe nucleus
nTPM: 5.1
2220 Male, age 76, midline 5.1
Periaquaductal grey, anterior
nTPM: 7.5
2502 Female, age 75, unknown 11.4
1795 Male, age 51, unknown 6.1
1947 Male, age 18, unknown 4.9
Periaquaductal grey, dorsal
nTPM: 6.2
1831 Male, age 72, unknown 6.3
1840 Male, age 53, unknown 6.3
2464 Female, age 72, unknown 6.3
2850 Male, age 76, both hemispheres 6.0
Periaquaductal grey, lateral
nTPM: 6.4
2140 Male, age 76, both hemispheres 7.2
2272 Male, age 74, both hemispheres 6.8
2053 Male, age 18, unknown 5.3
Pretectal area
nTPM: 8.0
1817 Female, age 42, unknown 11.1
2007 Male, age 72, unknown 11.0
1816 Male, age 51, unknown 9.4
1944 Female, age 72, unknown 9.1
2316 Male, age 76, right hemisphere 8.3
1815 Male, age 53, unknown 8.2
2667 Female, age 75, unknown 8.1
2224 Female, age 72, unknown 6.5
2407 Male, age 75, both hemispheres 6.0
2825 Male, age 18, unknown 5.7
2273 Male, age 74, both hemispheres 5.0
Red nucleus
nTPM: 7.7
1821 Female, age 72, unknown 10.4
2785 Male, age 18, unknown 9.5
1954 Female, age 42, unknown 9.4
2823 Male, age 76, right hemisphere 8.5
1865 Male, age 51, unknown 8.2
2227 Male, age 72, unknown 8.2
2503 Female, age 72, unknown 7.9
2588 Male, age 74, left hemisphere 7.6
2769 Male, age 72, unknown 7.4
2725 Female, age 75, unknown 5.4
2584 Male, age 75, left hemisphere 5.0
1904 Male, age 53, unknown 4.7
Substantia nigra
nTPM: 7.4
1941 Male, age 53, unknown 9.1
2665 Male, age 74, both hemispheres 9.1
1916 Female, age 42, unknown 8.3
2699 Male, age 18, unknown 8.3
2241 Male, age 72, unknown 7.3
1851 Male, age 51, unknown 6.6
1889 Female, age 72, unknown 6.6
2409 Female, age 72, unknown 6.4
2583 Male, age 75, right hemisphere 6.1
2590 Female, age 75, unknown 6.1
Superior colliculus
nTPM: 6.7
2587 Male, age 74, left hemisphere 8.3
2087 Female, age 72, unknown 8.1
1796 Male, age 53, unknown 7.2
2261 Male, age 18, unknown 6.6
1839 Male, age 51, unknown 6.4
1913 Female, age 42, unknown 6.4
2668 Female, age 75, unknown 6.4
1895 Male, age 76, right hemisphere 6.0
1995 Male, age 72, unknown 5.9
2664 Male, age 75, both hemispheres 5.7
Ventral tegmental area
nTPM: 6.4
2410 Female, age 72, unknown 7.1
2021 Male, age 53, unknown 7.0
2218 Male, age 76, both hemispheres 6.5
1915 Female, age 42, unknown 6.3
1942 Male, age 51, unknown 6.1
2223 Female, age 72, unknown 5.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 183

Max nTPM: 328.9
Min nTPM: 4.8
Std nTPM: 26.8
Median nTPM: 15.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 328.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 117.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 93.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 78.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 58.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 53.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 51.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 45.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 41.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.3
Sample A Female 10.5
Sample B Female 10.2
Sample C Male 8.3
Sample D Male 8.4
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.6
Sample A Female 6.4
Sample B Female 5.6
Sample C Male 6.1
Sample D Male 6.3
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 6.4
Min nTPM: 5.0
Sample B Female 5.0
Sample C Male 6.4
Sample D Male 5.4
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.2
Sample A Female 8.2
Sample B Female 8.7
Sample C Male 6.2
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Male 1.6
Sample B Male 1.1
Sample C Female 1.6
Sample D Female 1.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68301551 Antisense, RP_041130_01_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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