HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:55.4 nTPM
HPA Brain:19.7 nTPM
GTEx:55.4 nTPM
FANTOM5:61.8 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:34.6 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018830Antibody CAB010149
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 19.7
Sample id Sample description nTPM
Hippocampus
nTPM: 17.4
1898 Male, age 80, left hemisphere 24.3
2529 Female, age 94, left hemisphere 18.3
1911 Female, age 85, right hemisphere 17.6
1855 Male, age 76, left hemisphere 16.0
2621 Female, age 67, right hemisphere 14.4
2148 Female, age 91, left hemisphere 14.1
Dentate gyrus
nTPM: 16.4
2530 Female, age 94, left hemisphere 24.3
2010 Male, age 76, both hemispheres 21.4
2528 Male, age 74, both hemispheres 17.5
2246 Female, age 85, both hemispheres 12.8
1927 Female, age 91, both hemispheres 12.7
2531 Female, age 67, both hemispheres 10.0
Entorhinal gyrus
nTPM: 16.0
2117 Female, age 91, right hemisphere 25.6
2764 Male, age 80, right hemisphere 15.9
1938 Female, age 85, left hemisphere 15.2
1787 Male, age 76, left hemisphere 14.0
2613 Female, age 94, left hemisphere 12.7
2686 Male, age 75, right hemisphere 12.6
Hippocampus, CA1
nTPM: 14.9
1873 Female, age 85, both hemispheres 17.9
2527 Male, age 74, both hemispheres 17.3
2749 Male, age 80, left hemisphere 16.3
2082 Female, age 91, right hemisphere 12.9
2045 Male, age 76, both hemispheres 10.0
Hippocampus, CA2
nTPM: 18.2
1963 Male, age 80, left hemisphere 23.8
2249 Male, age 74, both hemispheres 20.8
1940 Female, age 85, left hemisphere 19.5
1892 Male, age 76, both hemispheres 16.6
2437 Female, age 94, left hemisphere 14.7
2113 Female, age 91, right hemisphere 13.6
Hippocampus, CA3
nTPM: 13.7
1891 Female, age 85, both hemispheres 24.3
1867 Male, age 76, both hemispheres 19.7
2436 Male, age 74, both hemispheres 14.0
2137 Male, age 80, left hemisphere 10.7
2620 Female, age 94, left hemisphere 8.0
2861 Female, age 67, both hemispheres 5.6
Parahippocampal cortex
nTPM: 14.0
1990 Female, age 91, right hemisphere 18.8
2018 Male, age 76, both hemispheres 17.7
2692 Male, age 74, both hemispheres 16.4
1850 Male, age 80, both hemispheres 15.9
2532 Female, age 72, left hemisphere 15.0
1933 Female, age 85, both hemispheres 13.0
2250 Female, age 67, right hemisphere 12.0
2245 Female, age 91, both hemispheres 10.8
2693 Female, age 94, both hemispheres 10.7
2622 Female, age 67, right hemisphere 9.8
Perirhinal gyrus
nTPM: 11.9
1847 Female, age 91, left hemisphere 13.5
1841 Female, age 85, right hemisphere 12.7
1794 Male, age 80, right hemisphere 12.3
2848 Male, age 76, right hemisphere 10.7
2521 Female, age 94, right hemisphere 10.2
Subiculum
nTPM: 19.7
2042 Male, age 76, both hemispheres 31.2
1901 Male, age 80, both hemispheres 22.1
1977 Female, age 85, both hemispheres 18.8
2729 Female, age 91, right hemisphere 18.8
2619 Male, age 74, both hemispheres 16.3
2438 Female, age 94, left hemisphere 10.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 55.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.4
Samples: 255

Max nTPM: 118.8
Min nTPM: 27.3
Std nTPM: 15.5
Median nTPM: 52.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 118.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 109.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 96.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 92.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 91.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 89.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 88.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 87.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 87.4
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 87.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 86.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.8
FF:10153-102I9 76 years, female 81.1
FF:10169-103B7 60 years, female 42.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 44.6
Pig sample Sample description nTPM
Subiculum
nTPM: 28.5
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.9
Sample A Female 30.9
Sample B Female 30.6
Sample C Male 22.9
Sample D Male 29.6
Dorsal hippocampus
nTPM: 44.7
Samples: 4

Max nTPM: 63.9
Min nTPM: 26.2
Sample A Female 63.9
Sample B Female 33.7
Sample C Male 54.8
Sample D Male 26.2
Entorhinal cortex
nTPM: 27.0
Samples: 4

Max nTPM: 31.8
Min nTPM: 22.8
Sample A Female 27.1
Sample B Female 31.8
Sample C Male 22.8
Sample D Male 26.1
Ventral hippocampus
nTPM: 32.5
Samples: 4

Max nTPM: 38.5
Min nTPM: 25.0
Sample A Female 38.5
Sample B Female 25.0
Sample C Male 27.9
Sample D Male 38.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 34.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.3
Samples: 4

Max nTPM: 35.2
Min nTPM: 28.7
Sample A Male 32.8
Sample B Male 35.2
Sample C Female 32.6
Sample D Female 28.7
Hippocampal formation
nTPM: 34.6
Samples: 4

Max nTPM: 40.1
Min nTPM: 31.1
Sample A Male 40.1
Sample B Male 33.4
Sample C Female 31.1
Sample D Female 33.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
2227 Antisense, RP_040428_01_B11, Mouse strain C57BL/6J (56 days, male) 0.4
2226 Antisense, RP_040428_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1

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