MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:483.2 nTPM
HPA Brain:345.9 nTPM
GTEx:483.2 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:143.5 nTPM
Mouse:71.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 345.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 345.9
2586 Male, age 75, left hemisphere 943.7
2828 Female, age 72, unknown 435.4
1827 Male, age 72, unknown 306.5
2219 Male, age 76, both hemispheres 304.0
2666 Male, age 74, left hemisphere 259.9
1833 Male, age 53, unknown 255.0
1870 Female, age 42, unknown 242.5
2019 Male, age 18, unknown 241.4
1830 Male, age 51, unknown 235.8
2411 Female, age 72, unknown 234.3
Dorsal raphe nucleus
nTPM: 280.7
2016 Female, age 72, unknown 343.6
1828 Male, age 53, unknown 320.5
2047 Male, age 72, unknown 305.8
2298 Female, age 72, unknown 225.6
2750 Male, age 76, both hemispheres 208.0
Inferior colliculus
nTPM: 291.0
2849 Male, age 72, unknown 361.5
1848 Female, age 42, unknown 302.5
1890 Male, age 53, unknown 299.1
2097 Female, age 72, unknown 200.8
Median raphe nucleus
nTPM: 206.8
2220 Male, age 76, midline 206.8
Periaquaductal grey, anterior
nTPM: 332.0
2502 Female, age 75, unknown 411.5
1795 Male, age 51, unknown 316.3
1947 Male, age 18, unknown 268.1
Periaquaductal grey, dorsal
nTPM: 316.2
1840 Male, age 53, unknown 406.4
2464 Female, age 72, unknown 327.3
2850 Male, age 76, both hemispheres 294.5
1831 Male, age 72, unknown 236.6
Periaquaductal grey, lateral
nTPM: 249.9
2140 Male, age 76, both hemispheres 292.7
2053 Male, age 18, unknown 283.6
2272 Male, age 74, both hemispheres 173.4
Pretectal area
nTPM: 280.7
2825 Male, age 18, unknown 337.6
2667 Female, age 75, unknown 331.3
2407 Male, age 75, both hemispheres 327.6
1817 Female, age 42, unknown 315.9
1815 Male, age 53, unknown 301.3
2007 Male, age 72, unknown 297.1
1816 Male, age 51, unknown 290.6
1944 Female, age 72, unknown 262.3
2316 Male, age 76, right hemisphere 245.0
2224 Female, age 72, unknown 217.0
2273 Male, age 74, both hemispheres 162.5
Red nucleus
nTPM: 318.3
2588 Male, age 74, left hemisphere 487.8
2769 Male, age 72, unknown 380.2
2503 Female, age 72, unknown 372.9
1821 Female, age 72, unknown 357.7
2227 Male, age 72, unknown 351.3
2584 Male, age 75, left hemisphere 336.7
1954 Female, age 42, unknown 324.0
1904 Male, age 53, unknown 299.7
1865 Male, age 51, unknown 279.7
2785 Male, age 18, unknown 246.2
2823 Male, age 76, right hemisphere 220.1
2725 Female, age 75, unknown 163.4
Substantia nigra
nTPM: 333.8
2665 Male, age 74, both hemispheres 511.8
2699 Male, age 18, unknown 447.6
1916 Female, age 42, unknown 418.5
1851 Male, age 51, unknown 377.8
2583 Male, age 75, right hemisphere 348.6
2590 Female, age 75, unknown 281.0
1889 Female, age 72, unknown 275.6
2241 Male, age 72, unknown 242.1
1941 Male, age 53, unknown 223.9
2409 Female, age 72, unknown 211.3
Superior colliculus
nTPM: 320.2
2664 Male, age 75, both hemispheres 708.5
2668 Female, age 75, unknown 420.0
1839 Male, age 51, unknown 302.1
1796 Male, age 53, unknown 301.0
2261 Male, age 18, unknown 290.7
2587 Male, age 74, left hemisphere 267.1
2087 Female, age 72, unknown 255.1
1995 Male, age 72, unknown 242.1
1895 Male, age 76, right hemisphere 233.1
1913 Female, age 42, unknown 182.1
Ventral tegmental area
nTPM: 265.9
1942 Male, age 51, unknown 310.1
1915 Female, age 42, unknown 308.5
2410 Female, age 72, unknown 279.6
2021 Male, age 53, unknown 264.0
2218 Male, age 76, both hemispheres 232.5
2223 Female, age 72, unknown 201.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 483.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 483.2
Samples: 183

Max nTPM: 1767.7
Min nTPM: 15.2
Std nTPM: 278.7
Median nTPM: 433.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1767.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1734.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1547.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1162.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1117.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1085.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1066.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1030.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 976.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 975.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 913.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 143.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.5
Samples: 4

Max nTPM: 174.4
Min nTPM: 118.2
Sample A Female 174.4
Sample B Female 118.2
Sample C Male 155.4
Sample D Male 125.9
Midbrain
nTPM: 134.5
Samples: 4

Max nTPM: 183.5
Min nTPM: 93.3
Sample A Female 123.1
Sample B Female 138.0
Sample C Male 183.5
Sample D Male 93.3
Periaqueductal gray
nTPM: 125.9
Samples: 3

Max nTPM: 139.2
Min nTPM: 113.3
Sample B Female 125.1
Sample C Male 139.2
Sample D Male 113.3
Superior colliculi
nTPM: 121.3
Samples: 4

Max nTPM: 146.7
Min nTPM: 74.5
Sample A Female 141.0
Sample B Female 74.5
Sample C Male 146.7
Sample D Male 123.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 87.3
Min nTPM: 62.9
Sample A Male 87.3
Sample B Male 63.3
Sample C Female 62.9
Sample D Female 70.9

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