HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:85.6 nTPM
HPA Brain:215.5 nTPM
GTEx:85.6 nTPM
FANTOM5:72.2 Scaled Tags Per Million
Pig:191.3 nTPM
Mouse:473.9 nTPM
Allen mouse:22.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA071191Antibody HPA074390
Glial cells MediumNot detected
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 215.5
Sample id Sample description nTPM
Hippocampus
nTPM: 122.9
1898 Male, age 80, left hemisphere 194.8
2621 Female, age 67, right hemisphere 144.6
1855 Male, age 76, left hemisphere 114.2
2529 Female, age 94, left hemisphere 110.3
2148 Female, age 91, left hemisphere 104.5
1911 Female, age 85, right hemisphere 69.0
Dentate gyrus
nTPM: 115.6
2530 Female, age 94, left hemisphere 185.4
1927 Female, age 91, both hemispheres 111.0
2531 Female, age 67, both hemispheres 105.3
2246 Female, age 85, both hemispheres 103.9
2010 Male, age 76, both hemispheres 102.5
2528 Male, age 74, both hemispheres 85.5
Entorhinal gyrus
nTPM: 203.8
2764 Male, age 80, right hemisphere 261.3
2613 Female, age 94, left hemisphere 253.4
2686 Male, age 75, right hemisphere 228.0
1787 Male, age 76, left hemisphere 217.7
1938 Female, age 85, left hemisphere 154.5
2117 Female, age 91, right hemisphere 107.8
Hippocampus, CA1
nTPM: 87.1
2749 Male, age 80, left hemisphere 119.0
1873 Female, age 85, both hemispheres 101.1
2527 Male, age 74, both hemispheres 82.9
2082 Female, age 91, right hemisphere 69.8
2045 Male, age 76, both hemispheres 62.9
Hippocampus, CA2
nTPM: 147.2
2437 Female, age 94, left hemisphere 310.2
1892 Male, age 76, both hemispheres 261.7
1963 Male, age 80, left hemisphere 115.9
1940 Female, age 85, left hemisphere 68.9
2113 Female, age 91, right hemisphere 66.1
2249 Male, age 74, both hemispheres 60.6
Hippocampus, CA3
nTPM: 129.4
1867 Male, age 76, both hemispheres 222.8
2861 Female, age 67, both hemispheres 208.7
1891 Female, age 85, both hemispheres 123.0
2620 Female, age 94, left hemisphere 88.4
2137 Male, age 80, left hemisphere 72.3
2436 Male, age 74, both hemispheres 61.1
Parahippocampal cortex
nTPM: 215.5
2622 Female, age 67, right hemisphere 305.1
1990 Female, age 91, right hemisphere 267.2
2532 Female, age 72, left hemisphere 247.4
2693 Female, age 94, both hemispheres 245.1
2245 Female, age 91, both hemispheres 212.8
2692 Male, age 74, both hemispheres 208.9
2250 Female, age 67, right hemisphere 204.4
1850 Male, age 80, both hemispheres 195.0
1933 Female, age 85, both hemispheres 155.9
2018 Male, age 76, both hemispheres 113.4
Perirhinal gyrus
nTPM: 184.5
1847 Female, age 91, left hemisphere 221.3
1794 Male, age 80, right hemisphere 209.2
2521 Female, age 94, right hemisphere 208.4
2848 Male, age 76, right hemisphere 146.9
1841 Female, age 85, right hemisphere 136.8
Subiculum
nTPM: 193.6
2438 Female, age 94, left hemisphere 371.6
2619 Male, age 74, both hemispheres 271.2
1977 Female, age 85, both hemispheres 203.7
1901 Male, age 80, both hemispheres 168.5
2042 Male, age 76, both hemispheres 75.1
2729 Female, age 91, right hemisphere 71.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 85.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 85.6
Samples: 255

Max nTPM: 422.2
Min nTPM: 4.3
Std nTPM: 66.2
Median nTPM: 65.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 422.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 306.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 303.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 299.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 292.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 290.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 283.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 267.2
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 265.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 257.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 254.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.2
FF:10153-102I9 76 years, female 81.1
FF:10169-103B7 60 years, female 63.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 191.3
Pig sample Sample description nTPM
Subiculum
nTPM: 140.9
Samples: 4

Max nTPM: 217.2
Min nTPM: 89.4
Sample A Female 217.2
Sample B Female 107.9
Sample C Male 149.0
Sample D Male 89.4
Dorsal hippocampus
nTPM: 141.3
Samples: 4

Max nTPM: 232.8
Min nTPM: 80.8
Sample A Female 136.7
Sample B Female 114.8
Sample C Male 232.8
Sample D Male 80.8
Entorhinal cortex
nTPM: 191.3
Samples: 4

Max nTPM: 223.3
Min nTPM: 139.5
Sample A Female 184.4
Sample B Female 223.3
Sample C Male 139.5
Sample D Male 218.0
Ventral hippocampus
nTPM: 172.5
Samples: 4

Max nTPM: 256.5
Min nTPM: 92.9
Sample A Female 225.9
Sample B Female 114.6
Sample C Male 256.5
Sample D Male 92.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 473.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 473.9
Samples: 4

Max nTPM: 499.4
Min nTPM: 445.0
Sample A Male 499.4
Sample B Male 474.9
Sample C Female 445.0
Sample D Female 476.1
Hippocampal formation
nTPM: 459.5
Samples: 4

Max nTPM: 466.8
Min nTPM: 446.3
Sample A Male 446.3
Sample B Male 462.9
Sample C Female 466.8
Sample D Female 461.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 22.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.7
68193003 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 22.7
67752308 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 18.5

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